WormBase Tree Display for Variation: WBVar00057890
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| WBVar00057890 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00057890 | |||
| Other_name | pas23175 | ||||
| snp_T25B6[2] | |||||
| haw106071 | |||||
| cewivar00060085 | |||||
| T25B6.4.1:c.*72A>T | |||||
| HGVSg | CHROMOSOME_X:g.9016738A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | T25B6 | |
| Flanking_sequences | gaatgcggtaaatgactgattttaatgatattttcaaatttgaaattgttccctcactaactttatgcaaatagacgtaaataaatgttcccatttcttgctcttgaataaaatgttgaatcaatttcaggagtaccttggcgtatacgcaatcttctaccaccgcagccgtacggagctaatgaagttgctccacgagatgtgcccaaaccgtcatttgaactggtgaacaagaccgactcattccttcgagagacacgttttgtgacatgtttcaagatctctgattctcatacgtcg | cgtaataaatcattcgtttttttatttctcatatactagtctgattcatgaaagaaatttctaacttgatttttgttagacgtgtattacagcatacatatctgaaaaaccgtgggaattttaataatgaattgtaagatctttggaggaaaagaacaattgtttttgttaataaagtaaaaagtagattttaaaaaatattgaaaaaaagtagctataattttcccgtttttgcccagaaaaaatgtatttaaatcaactgcaaaacttcaaaacttgtagagcgttttaagacacata | |||
| Mapping_target | T25B6 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (35) | |||||
| Laboratory | RW | ||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00081711 | |||
| WBVar00246438 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00020790 | |||
| Transcript | T25B6.4.1 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T25B6.4.1:c.*72A>T | ||||
| cDNA_position | 416 | ||||
| Exon_number | 5/5 | ||||
| Reference | WBPaper00004703 | ||||
| Method | WGS_Pasadena_Quinlan |
