WormBase Tree Display for Variation: WBVar00057480
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| WBVar00057480 | Name | Public_name | WBVar00057480 | ||
|---|---|---|---|---|---|
| Other_name | pas23093 | ||||
| uCE3-973 | |||||
| haw143783 | |||||
| cewivar00106932 | |||||
| CE51783:p.Phe173= | |||||
| F57B9.2a.1:c.570T>C | |||||
| F57B9.2b.1:c.519T>C | |||||
| CE47929:p.Phe190= | |||||
| HGVSg | CHROMOSOME_III:g.6949120T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | F57B9 | |
| Flanking_sequences | aaatgaaaaaccaagaagtgacattttattttattggaaaacttgaaaaaagtgggcgtggcataatcagccatttgatttttttcgttgcaaaatttgaaatatcatgaaaaattgagaataattttcaaaattatcattaagacccaacaattagtcttgcatgtaagattattctcaattttctaaataaataaaatgctaaattaaaaattgaattttgattcttttttcaaattaattatttgatacttttttgcagctagccggtttattcgatcctctggtggtccttccgtt | atcagcaagctcgccaagagccggcgtcttcgtcactatcttcagcctttgttccttggtcactgtgaatatacatctgatacgtggggtactgtaccgtttttttaaattcaattttttttacattacaaataattttgaaggcgtctctccggaaggtgctgaaatatacaatcaaattgcacgtggcaacttcacaacacaaactttgatagaaatagtacagacatttctggagaaagaagtgaaagaagttatcatcagttcgactaccgatccaatcaaacttgtacaatatct | |||
| Mapping_target | F57B9 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (19) | |||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Swan | |||||
| History | Acquires_merge | WBVar00269810 | |||
| WBVar00563648 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00002845 | |||
| Transcript | F57B9.2a.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | F57B9.2a.1:c.570T>C | ||||
| HGVSp | CE47929:p.Phe190= | ||||
| cDNA_position | 617 | ||||
| CDS_position | 570 | ||||
| Protein_position | 190 | ||||
| Exon_number | 6/20 | ||||
| Codon_change | ttT/ttC | ||||
| Amino_acid_change | F | ||||
| F57B9.2b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F57B9.2b.1:c.519T>C | ||||
| HGVSp | CE51783:p.Phe173= | ||||
| cDNA_position | 519 | ||||
| CDS_position | 519 | ||||
| Protein_position | 173 | ||||
| Exon_number | 5/18 | ||||
| Codon_change | ttT/ttC | ||||
| Amino_acid_change | F | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00005369 | |||||
| Method | WGS_Pasadena_Quinlan |
