WormBase Tree Display for Variation: WBVar00056748
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WBVar00056748 | Name | Public_name | WBVar00056748 | ||
---|---|---|---|---|---|
Other_name | haw92448 | ||||
cewivar00260659 | |||||
R10E8.4:n.1633T>G | |||||
R10E8.1a.4:c.-987A>C | |||||
R10E8.1a.5:c.-987A>C | |||||
R10E8.1a.2:c.-54+2905A>C | |||||
R10E8.1a.3:c.-987A>C | |||||
HGVSg | CHROMOSOME_V:g.18249361T>G | ||||
Sequence_details | SMap | S_parent | Sequence | R10E8 | |
Flanking_sequences | gtgaaggcggacatcacaaatgggt | ttccaagacgagaaggtcctcgaag | |||
Mapping_target | R10E8 | ||||
Type_of_mutation | Substitution | T | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
WGS_Hawaiian_Waterston | |||||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00011210 | |||
WBGene00011207 | |||||
Transcript | R10E8.1a.5 | VEP_consequence | 5_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | R10E8.1a.5:c.-987A>C | ||||
cDNA_position | 142 | ||||
Exon_number | 1/9 | ||||
R10E8.1a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | R10E8.1a.2:c.-54+2905A>C | ||||
Intron_number | 2/7 | ||||
R10E8.1a.4 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | R10E8.1a.4:c.-987A>C | ||||
cDNA_position | 73 | ||||
Exon_number | 2/10 | ||||
R10E8.1a.3 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | R10E8.1a.3:c.-987A>C | ||||
cDNA_position | 99 | ||||
Exon_number | 2/10 | ||||
Pseudogene | R10E8.4 | VEP_consequence | non_coding_transcript_exon_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | R10E8.4:n.1633T>G | ||||
cDNA_position | 1633 | ||||
Exon_number | 5/5 | ||||
Remark | [20081124 db] this Variation was previously named hw92448 | ||||
Method | WGS_Hawaiian_Waterston |