WormBase Tree Display for Variation: WBVar00055871
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| WBVar00055871 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00055871 | |||
| Other_name | pas22771 | ||||
| snp_D1009[2] | |||||
| haw105980 | |||||
| cewivar00060005 | |||||
| D1009.3b.2:c.1182-47A>T | |||||
| D1009.3a.1:c.1188-47A>T | |||||
| D1009.3b.1:c.1182-47A>T | |||||
| HGVSg | CHROMOSOME_X:g.8910210A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | D1009 | |
| Flanking_sequences | gaaagtcaactttggaaagaaacaagacggttacaaaattcaaatcactgaagaaggagtaggtaatcttacttacaatggggtcgatccgttctttggtgcaaatggtagaaggttcagtacaaatgacaatgatcaagacgagaatacgtttatgaattgtgctcagttcagaatggttgggtaagtaaatttatttaaaacaatacaagtatttaaaaaaaaacttcaaaacaaagaaattgctaaacactgggaacgttctttatctgttcttgtcttgtggcatctaaaaataat | aattaattaaaccaataaacgtattaattgtgttattcacttacagaccatggtggcacccaaaatcctgctcagatgttgggctcaacggatatttccagacgacatctgaaaagtacgacgtcaaagatagaaaccaaaacgcgaaacgctatttcgtatgggccttcgacaagcaaatttacaatgggtatccgtacacaatccatgtcagaaagtctaccatgctcctgaaaactggtgatcctcaacgctaaattttatatatactctctcatacaattaattcatccaactaat | |||
| Mapping_target | D1009 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (35) | |||||
| Laboratory | RW | ||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00081620 | |||
| WBVar00243908 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00017013 | |||
| Transcript | D1009.3b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | D1009.3b.1:c.1182-47A>T | ||||
| Intron_number | 8/9 | ||||
| D1009.3a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | D1009.3a.1:c.1188-47A>T | ||||
| Intron_number | 7/8 | ||||
| D1009.3b.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | D1009.3b.2:c.1182-47A>T | ||||
| Intron_number | 7/8 | ||||
| Reference | WBPaper00004703 | ||||
| Method | WGS_Pasadena_Quinlan |
