WormBase Tree Display for Variation: WBVar00054147
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| WBVar00054147 | Evidence | Paper_evidence | WBPaper00005871 | ||
|---|---|---|---|---|---|
| WBPaper00004414 | |||||
| Person_evidence | WBPerson1687 | ||||
| Name | Public_name | cg119 | |||
| HGVSg | CHROMOSOME_V:g.12909170_12912298del | ||||
| Sequence_details | SMap | S_parent | Sequence | F54F3 | |
| Flanking_sequences | atcatcattgttgactgtcttccttggttt | ccccgaatgtctacaatggattccaactga | |||
| Mapping_target | F54F3 | ||||
| Type_of_mutation | Deletion | ||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00005030 | ||||
| WBStrain00047763 | |||||
| WBStrain00047765 | |||||
| WBStrain00047766 | |||||
| Laboratory | CH | ||||
| Person | WBPerson1687 | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00003738 | |||
| Transcript | F54F3.1b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-1413 | ||||
| CDS_position | ?-1402 | ||||
| Protein_position | ?-468 | ||||
| Intron_number | 2-7/16 | ||||
| Exon_number | 1-8/17 | ||||
| F54F3.1a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-1407 | ||||
| CDS_position | ?-1402 | ||||
| Protein_position | ?-468 | ||||
| Intron_number | 2-7/17 | ||||
| Exon_number | 1-8/18 | ||||
| F54F3.1c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-1413 | ||||
| CDS_position | ?-1402 | ||||
| Protein_position | ?-468 | ||||
| Intron_number | 2-7/13 | ||||
| Exon_number | 1-8/14 | ||||
| Interactor | WBInteraction000502165 | ||||
| WBInteraction000502168 | |||||
| WBInteraction000558094 | |||||
| WBInteraction000558099 | |||||
| WBInteraction000558100 | |||||
| WBInteraction000558105 | |||||
| WBInteraction000573247 | |||||
| Genetics | Interpolated_map_position | V | 4.72664 | ||
| Mapping_data | In_multi_point | 4535 | |||
| Description | Phenotype (5) | ||||
| Reference (12) | |||||
| Remark | cg119 deletion removes exons 1-7 of the nid-1 coding region plus 948 bp upstream of the ATG and is a molecular null for NID-1 | Paper_evidence | WBPaper00005871 | ||
| Tc1 excision | Person_evidence | WBPerson1687 | |||
| Method | Deletion_allele |
