WormBase Tree Display for Variation: WBVar00054112
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| WBVar00054112 | Evidence | Paper_evidence | WBPaper00002814 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | cg45 | |||||
| Other_name | CE48054:p.Gln1389Ter | ||||||
| CE36390:p.Gln1132Ter | |||||||
| K04H4.1b.1:c.3394C>T | |||||||
| K04H4.1a.1:c.4165C>T | |||||||
| HGVSg | CHROMOSOME_III:g.9338753G>A | ||||||
| Sequence_details | SMap | S_parent | Sequence | K04H4 | |||
| Flanking_sequences | ggagagcgtggtcttccaggtgtcccagga | aacaaggacgatctggtgacaacggttatc | |||||
| Mapping_target | K04H4 | ||||||
| Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00002814 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Laboratory | CH | ||||||
| Status | Live | ||||||
| Linked_to | WBVar00145364 | ||||||
| Affects | Gene | WBGene00001263 | |||||
| Transcript | K04H4.1a.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | K04H4.1a.1:c.4165C>T | ||||||
| HGVSp | CE48054:p.Gln1389Ter | ||||||
| cDNA_position | 4214 | ||||||
| CDS_position | 4165 | ||||||
| Protein_position | 1389 | ||||||
| Exon_number | 11/14 | ||||||
| Codon_change | Caa/Taa | ||||||
| Amino_acid_change | Q/* | ||||||
| K04H4.1b.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | K04H4.1b.1:c.3394C>T | ||||||
| HGVSp | CE36390:p.Gln1132Ter | ||||||
| cDNA_position | 3394 | ||||||
| CDS_position | 3394 | ||||||
| Protein_position | 1132 | ||||||
| Exon_number | 8/10 | ||||||
| Codon_change | Caa/Taa | ||||||
| Amino_acid_change | Q/* | ||||||
| Genetics | Interpolated_map_position | III | 0.421255 | ||||
| Reference | WBPaper00002814 | ||||||
| Method | Substitution_allele |
