WormBase Tree Display for Variation: WBVar00052997
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| WBVar00052997 | Evidence | Paper_evidence | WBPaper00005369 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00052997 | |||
| Other_name | CE4-188 | ||||
| haw59858 | |||||
| cewivar00155987 | |||||
| Y55D9A.1b.1:c.487C>T | |||||
| Y55D9A.1c.1:c.481C>T | |||||
| CE29066:p.Pro163Ser | |||||
| CE19234:p.Pro161Ser | |||||
| Y55D9A.1a.1:c.481C>T | |||||
| CE40826:p.Pro161Ser | |||||
| HGVSg | CHROMOSOME_IV:g.12613441G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y55D9A | |
| Flanking_sequences | tagccatatgtttttatcggtatgttttaatttctagaaattttataaaaacaatttttctgtttagaaaaaagggttaaaaatcaatggaaaatcgtaaaaattgtgagatttcttcttcttcttttcgaaaactttttgcatccaattaaatccagatgtttcatttttttttcgtttaaaaatttcaaaagctcaccaataaattgttcttcatcaacaaccatcacttcatcatcattttcatttg | tttcttctgattctctttttcatcagtagtcatcattacagtttcttcttcactttcctctacatcagtgctctccattcgttcaattggagctgttttaagcattcgaatagctgttggtgaagactcttctgacgtttttcgtgccaaactaccacgtctttcgatttggcttgttgaaactggaacttttagaacattggaattaaaagatagaaaattatggaaaacagttttttctaatttttta | |||
| Mapping_target | Y55D9A | ||||
| Type_of_mutation | Substitution | g | a | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Confirmed_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (14) | |||||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| Analysis | SNP_Swan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00192582 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00013223 | |||
| Transcript | Y55D9A.1c.1 | VEP_consequence | missense_variant | ||
| VEP_impact | MODERATE | ||||
| HGVSc | Y55D9A.1c.1:c.481C>T | ||||
| HGVSp | CE40826:p.Pro161Ser | ||||
| cDNA_position | 486 | ||||
| CDS_position | 481 | ||||
| Protein_position | 161 | ||||
| Exon_number | 4/11 | ||||
| Codon_change | Cca/Tca | ||||
| Amino_acid_change | P/S | ||||
| Y55D9A.1b.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | ||||
| HGVSc | Y55D9A.1b.1:c.487C>T | ||||
| HGVSp | CE29066:p.Pro163Ser | ||||
| cDNA_position | 492 | ||||
| CDS_position | 487 | ||||
| Protein_position | 163 | ||||
| Exon_number | 4/12 | ||||
| Codon_change | Cca/Tca | ||||
| Amino_acid_change | P/S | ||||
| Y55D9A.1a.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | ||||
| HGVSc | Y55D9A.1a.1:c.481C>T | ||||
| HGVSp | CE19234:p.Pro161Ser | ||||
| cDNA_position | 485 | ||||
| CDS_position | 481 | ||||
| Protein_position | 161 | ||||
| Exon_number | 4/12 | ||||
| Codon_change | Cca/Tca | ||||
| Amino_acid_change | P/S | ||||
| Reference | WBPaper00005369 | ||||
| Method | SNP_Swan |
