WormBase Tree Display for Variation: WBVar00052913
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WBVar00052913 | Name | Public_name | WBVar00052913 | ||
---|---|---|---|---|---|
Other_name | haw41705 | ||||
cewivar00149783 | |||||
Y55D5A.5a.1:c.5446-47T>A | |||||
Y55D5A.5g.1:c.1924-47T>A | |||||
Y55D5A.5e.1:c.5218-47T>A | |||||
Y55D5A.5d.1:c.5305-47T>A | |||||
Y55D5A.5f.1:c.3016-47T>A | |||||
Y55D5A.5c.1:c.5692-47T>A | |||||
HGVSg | CHROMOSOME_III:g.2996061A>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y55D5A | |
Flanking_sequences | atatttgtgtttgaaaaaaaaaaaa | ttttttttggaaatttactcgaatt | |||
Mapping_target | Y55D5A | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | |||
WGS_Hawaiian_Waterston | |||||
WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00000898 | |||
Transcript | Y55D5A.5g.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y55D5A.5g.1:c.1924-47T>A | ||||
Intron_number | 3/3 | ||||
Y55D5A.5e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y55D5A.5e.1:c.5218-47T>A | ||||
Intron_number | 14/14 | ||||
Y55D5A.5f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y55D5A.5f.1:c.3016-47T>A | ||||
Intron_number | 7/7 | ||||
Y55D5A.5a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y55D5A.5a.1:c.5446-47T>A | ||||
Intron_number | 17/18 | ||||
Y55D5A.5c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y55D5A.5c.1:c.5692-47T>A | ||||
Intron_number | 19/20 | ||||
Y55D5A.5d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y55D5A.5d.1:c.5305-47T>A | ||||
Intron_number | 15/15 | ||||
Remark | [20081124 db] this Variation was previously named hw41705 | ||||
Method | WGS_Hawaiian_Waterston |