WormBase Tree Display for Variation: WBVar00052893
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WBVar00052893 | Evidence | Paper_evidence | WBPaper00038208 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00052893 | |||
Other_name | haw41701 | ||||
haw142327 | |||||
cewivar00195720 | |||||
Y55D5A.1b.1:c.43-250G>A | |||||
Y55D5A.1b.3:c.43-250G>A | |||||
Y55D5A.1b.2:c.43-250G>A | |||||
Y55D5A.1b.4:c.43-250G>A | |||||
Y55D5A.1a.1:c.412-250G>A | |||||
HGVSg | CHROMOSOME_III:g.2986814G>A | ||||
Sequence_details | SMap | S_parent | Sequence | Y55D5A | |
Flanking_sequences | attaatttcaaatctttaaattaaa | aattcatcatcagcgtctcaagagc | |||
Mapping_target | Y55D5A | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00562192 | |||
Status | Live | ||||
Affects | Gene | WBGene00021915 | |||
Transcript | Y55D5A.1b.3 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y55D5A.1b.3:c.43-250G>A | ||||
Intron_number | 3/5 | ||||
Y55D5A.1b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y55D5A.1b.1:c.43-250G>A | ||||
Intron_number | 5/7 | ||||
Y55D5A.1b.4 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y55D5A.1b.4:c.43-250G>A | ||||
Intron_number | 2/3 | ||||
Y55D5A.1b.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y55D5A.1b.2:c.43-250G>A | ||||
Intron_number | 4/6 | ||||
Y55D5A.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y55D5A.1a.1:c.412-250G>A | ||||
Intron_number | 5/7 | ||||
Reference | WBPaper00038208 | ||||
Remark | [20081124 db] this Variation was previously named hw41701 | ||||
Method | WGS_Hawaiian_Waterston |