WormBase Tree Display for Variation: WBVar00052862
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| WBVar00052862 | Evidence | Paper_evidence | WBPaper00005369 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00052862 | |||
| Other_name | CE4-126 | ||||
| cewivar00205787 | |||||
| R11E3.4.2:c.397-263G>A | |||||
| R11E3.4.1:c.397-263G>A | |||||
| R11E3.4.3:c.397-263G>A | |||||
| HGVSg | CHROMOSOME_IV:g.4779025C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | R11E3 | |
| Flanking_sequences | caggttttaattagaagtgtcgtctacaaaactatggagttattaatgtgatgctgaaaattgcatacatgtattttaatacattttccccctattcatgcgtgccgaaaaatgtaaaaaaaagcaaacatgtgttgcatgttttcgacattattcggcatttttccgcatttttctacattggcagtcaccccactttgcatgttgaagacgagagacgcagaaaaactctacctgtggggatacatca | aaccccatcgaagaattaaggcaattaggctgttaaagagttacagttttaagtgcacaaaaacttttaaatgagaaaatatcattttggccgttttcacaatcagttaaatttatttttatagtttaatttgttaaaaatctattccatctattccattttcagttgaaaattaatctcaacattttgccaagctttttaaacacaaagttatattttttttaattattttttcgtgacatcgtttaaa | |||
| Mapping_target | R11E3 | ||||
| Type_of_mutation | Substitution | c | t | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Confirmed_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Analysis | SNP_Swan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00020006 | |||
| Transcript | R11E3.4.3 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | R11E3.4.3:c.397-263G>A | ||||
| Intron_number | 3/9 | ||||
| R11E3.4.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R11E3.4.1:c.397-263G>A | ||||
| Intron_number | 4/10 | ||||
| R11E3.4.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R11E3.4.2:c.397-263G>A | ||||
| Intron_number | 4/10 | ||||
| Reference | WBPaper00005369 | ||||
| Method | SNP_Swan |
