WormBase Tree Display for Variation: WBVar00052097
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| WBVar00052097 | Name | Public_name | WBVar00052097 | ||
|---|---|---|---|---|---|
| Other_name | CE2-112 | ||||
| haw18788 | |||||
| haw125657 | |||||
| cewivar00178749 | |||||
| CE51370:p.Val140= | |||||
| C08F1.8.1:c.420C>T | |||||
| HGVSg | CHROMOSOME_II:g.1807821G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | C08F1 | |
| Flanking_sequences | aacaagccacgtagacaatcggcatgactattatgttgaggattgggcaggagacataagttgtgtagtagaatccaataatcaccttctcgtctcgcactaaacttgtatccacggagcataaaagtatgcagtagagttctgtgagtgcgaaaaacagaatcagaaatattttctgagcattggttgttttggttgtgctcatcagactgtagtgaatcggagagaagatttctttaagctgggttaa | actacaaggagcaagtagaacaggacccctacgaggagattggtcacgagtacctggaaattagaaaattacagatgttagtaaacccagagaaaaaaaaaactcacctgcgcccaactactgtacagtcctataatggcattaactgggagcaaaatgttcaaggaaagcattccagccggcaatccgtacagtcttgaatagaaacttttaattgagtgctgttccttccagtacaccaatgtaacag | |||
| Mapping_target | C08F1 | ||||
| Type_of_mutation | Substitution | g | a | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Confirmed_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
| WGS_De_Bono | |||||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson4037 | ||||
| WBPerson1562 | |||||
| Analysis | SNP_Swan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00165538 | |||
| WBVar01361620 | |||||
| WBVar00545522 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00015611 | |||
| Transcript | C08F1.8.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | C08F1.8.1:c.420C>T | ||||
| HGVSp | CE51370:p.Val140= | ||||
| cDNA_position | 443 | ||||
| CDS_position | 420 | ||||
| Protein_position | 140 | ||||
| Exon_number | 3/4 | ||||
| Codon_change | gtC/gtT | ||||
| Amino_acid_change | V | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| WBPaper00005369 | |||||
| Method | SNP_Swan |
