WormBase Tree Display for Variation: WBVar00052042
expand all nodes | collapse all nodes | view schema
| WBVar00052042 | Name | Public_name | WBVar00052042 | ||
|---|---|---|---|---|---|
| Other_name | CE2-27 | ||||
| pas36748 | |||||
| haw25694 | |||||
| cewivar00090748 | |||||
| R12C12.9a.1:c.346-20A>T | |||||
| R12C12.9b.1:c.346-20A>T | |||||
| HGVSg | CHROMOSOME_II:g.6024238T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | R12C12 | |
| Flanking_sequences | gctcacagtcacttcagcaacctcttgatcatcatctgattcacaatcgaatgcttcttccagttctgtgatatagatttcttctttttcagctccttcaaagtgagtatgaaaatgcttggacgcagctccgccatcagtccaagcccagaatactgctattccaagaacgacaacgtagactgcaataaccaagaacatcacccaagccagtttacgacgaaccaaacactgaaatcagggaagaatc | gtttttttgcaaatgaatacccaatcgcaaatactaaattttcagttaaaattcagaacgtaatgataatccttgtatatcataaattcgatcaaaagtctcagataattttaatcaatttcaacagaatggcctatttggacatacagagcattcttgagtgaaacttgtcaattctatcaaactcgaaagtttgaggaaaaattgaaagaaacaaacaattaattagattgatttaggtaatttttaa | |||
| Mapping_target | R12C12 | ||||
| Type_of_mutation | Substitution | t | a | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Confirmed_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (38) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | SNP_Swan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| WGS_Pasadena_Quinlan | |||||
| History | Acquires_merge | WBVar00172444 | |||
| WBVar01372282 | |||||
| WBVar01240352 | |||||
| WBVar01306708 | |||||
| WBVar00224972 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00020029 | |||
| Transcript | R12C12.9b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | R12C12.9b.1:c.346-20A>T | ||||
| Intron_number | 4/7 | ||||
| R12C12.9a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R12C12.9a.1:c.346-20A>T | ||||
| Intron_number | 4/7 | ||||
| Reference | WBPaper00037807 | ||||
| WBPaper00005369 | |||||
| Method | SNP_Swan |
