WormBase Tree Display for Variation: WBVar00051952
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| WBVar00051952 | Name | Public_name | WBVar00051952 | ||
|---|---|---|---|---|---|
| Other_name | CE1-236 | ||||
| haw117891 | |||||
| cewivar00167389 | |||||
| CE06490:p.Val157= | |||||
| T22C1.2.1:c.471T>C | |||||
| T22C1.1.1:c.*147A>G | |||||
| HGVSg | CHROMOSOME_I:g.7937798A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | T22C1 | |
| Flanking_sequences | caaaagcggaaggtggaagaacaattgctgcttctgacattaagacattttttgatgctctaaaggaagagaatctcgagaaaaagcgggctcgatacgaataatggatcaaaaaatcacacattcactcctcatcgtcttcttttgtttctcttgatccttgtacatgtaaaccccttgagtaacctgaaatattaaattggctctaatttcaaaatacgagactctcaccgaaccgtagttgatccac | acatatgagacgagaacagtggcggctcgaagactttctctgtgaattttccagccttgatattctcgaattgtttccgtgatcgcctcgcccaatttgtcccagtaatcaatctacaaatcgtttatttgtttcaaactattccattactattatttcaccttcattcctttacttcgccgatactttgcatgtttctggccgatttcttgacaaagtttcgatattttgtcaggctcgtccagacttt | |||
| Mapping_target | T22C1 | ||||
| Type_of_mutation | Substitution | a | g | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Confirmed_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | AX | ||||
| Person | WBPerson4037 | ||||
| Analysis | SNP_Swan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01345787 | |||
| WBVar00537756 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00011913 | |||
| WBGene00011912 | |||||
| Transcript | T22C1.2.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | T22C1.2.1:c.471T>C | ||||
| HGVSp | CE06490:p.Val157= | ||||
| cDNA_position | 476 | ||||
| CDS_position | 471 | ||||
| Protein_position | 157 | ||||
| Exon_number | 5/7 | ||||
| Codon_change | gtT/gtC | ||||
| Amino_acid_change | V | ||||
| T22C1.1.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T22C1.1.1:c.*147A>G | ||||
| cDNA_position | 1220 | ||||
| Exon_number | 7/7 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| WBPaper00005369 | |||||
| Method | SNP_Swan |
