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WormBase Tree Display for Variation: WBVar00047133

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Name Class

WBVar00047133EvidencePaper_evidenceWBPaper00038208
NamePublic_nameWBVar00047133
Other_namepas2275
haw40549
haw141574
cewivar00195008
H04J21.3a.1:c.1254-60T>A
H04J21.3b.1:c.1254-60T>A
HGVSgCHROMOSOME_III:g.2356395T>A
Sequence_detailsSMapS_parentSequenceH04J21
Flanking_sequencesaaaataaagggaaaaatcgaattttaattaatttttctcgaataatttga
Mapping_targetH04J21
Type_of_mutationSubstitutionTA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisWGS_Hawaiian_Waterston
WGS_Yanai
Million_mutation_project_reanalysis
WBStrain00004604From_analysisWGS_Pasadena_Quinlan
WBStrain00006625From_analysisMillion_mutation_project_reanalysis
WBStrain00008273From_analysisMillion_mutation_project_reanalysis
WBStrain00022850From_analysisMillion_mutation_project_reanalysis
WBStrain00022930From_analysisMillion_mutation_project_reanalysis
WBStrain00023138From_analysisMillion_mutation_project_reanalysis
WBStrain00027648From_analysisMillion_mutation_project_reanalysis
WBStrain00027652From_analysisMillion_mutation_project_reanalysis
WBStrain00027662From_analysisMillion_mutation_project_reanalysis
LaboratoryRW
PersonWBPerson1562
WBPerson6900
WBPerson4037
AnalysisWGS_Hawaiian_Waterston
WGS_Yanai
Million_mutation_project_reanalysis
WGS_Pasadena_Quinlan
HistoryAcquires_mergeWBVar00097416
WBVar00561439
StatusLive
AffectsGeneWBGene00001589
TranscriptH04J21.3b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScH04J21.3b.1:c.1254-60T>A
Intron_number8/14
H04J21.3a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScH04J21.3a.1:c.1254-60T>A
Intron_number8/15
ReferenceWBPaper00038208
Remark[20081124 db] this Variation was previously named hw40549
MethodWGS_Hawaiian_Waterston