WormBase Tree Display for Variation: WBVar00045701
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| WBVar00045701 | Name | Public_name | WBVar00045701 | ||
|---|---|---|---|---|---|
| Other_name (14) | |||||
| HGVSg | CHROMOSOME_III:g.3004733C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y55D5A | |
| Flanking_sequences | acacaagaaaacaaagcaagtacaaaatgtcgttaaatgcggtgtattgtgtgcaaacaccgatttttcgcattttttctcggccctcgtttgaaaaaagttgcagtgcaaaaattactcatcaaaaactcacaaataacgtccatcggccaaattctggaataggacaccctgattccgtgttgaatatcctctcttcgcaccgacacatctcgtcataacaattgatccatcgacttttgacttaagctttacaacataaccgaatattccaccattcacttcagtcggtggatccca | gtcacgttgacttgttgactattattcataaatctccattcaattgtttcattcaacactttatcaatgtctgtgatgtgttttgttcgtttcaatgctcccgcacgatgggatattgagcaagatgctccgggtactgtcatgttttggcacgcggatagagaaatctgaacgaaaaatttccaattttattggaaatttgtaatttttatcaaaaaatatacaattcaagtaattactagatttttgcaaacaaatttttttgaatttttctcatcaacattaaccttttttaaaggt | |||
| Mapping_target | Y55D5A | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (21) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00052948 | |||
| WBVar01329466 | |||||
| WBVar00562199 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000898 | |||
| Transcript | Y55D5A.5e.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y55D5A.5e.1:c.3057G>A | ||||
| HGVSp | CE50158:p.Thr1019= | ||||
| cDNA_position | 3057 | ||||
| CDS_position | 3057 | ||||
| Protein_position | 1019 | ||||
| Exon_number | 11/15 | ||||
| Codon_change | acG/acA | ||||
| Amino_acid_change | T | ||||
| Y55D5A.5f.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y55D5A.5f.1:c.855G>A | ||||
| HGVSp | CE50215:p.Thr285= | ||||
| cDNA_position | 855 | ||||
| CDS_position | 855 | ||||
| Protein_position | 285 | ||||
| Exon_number | 4/8 | ||||
| Codon_change | acG/acA | ||||
| Amino_acid_change | T | ||||
| Y55D5A.5a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y55D5A.5a.1:c.3285G>A | ||||
| HGVSp | CE46852:p.Thr1095= | ||||
| cDNA_position | 3383 | ||||
| CDS_position | 3285 | ||||
| Protein_position | 1095 | ||||
| Exon_number | 14/19 | ||||
| Codon_change | acG/acA | ||||
| Amino_acid_change | T | ||||
| Y55D5A.5c.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y55D5A.5c.1:c.3531G>A | ||||
| HGVSp | CE50204:p.Thr1177= | ||||
| cDNA_position | 3694 | ||||
| CDS_position | 3531 | ||||
| Protein_position | 1177 | ||||
| Exon_number | 16/21 | ||||
| Codon_change | acG/acA | ||||
| Amino_acid_change | T | ||||
| Y55D5A.5d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y55D5A.5d.1:c.3144G>A | ||||
| HGVSp | CE50312:p.Thr1048= | ||||
| cDNA_position | 3144 | ||||
| CDS_position | 3144 | ||||
| Protein_position | 1048 | ||||
| Exon_number | 12/16 | ||||
| Codon_change | acG/acA | ||||
| Amino_acid_change | T | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
