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WormBase Tree Display for Variation: WBVar00045181

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Name Class

WBVar00045181NamePublic_nameWBVar00045181
Other_namepas20633
uCE3-827
haw42330
haw142772
cewivar00105707
F45H7.2d.2:c.2093-53T>A
F45H7.2d.1:c.2093-53T>A
F45H7.2d.3:c.2093-53T>A
F45H7.2b.1:c.2072-53T>A
F45H7.2a.1:c.2600-53T>A
HGVSgCHROMOSOME_III:g.3359116T>A
Sequence_detailsSMapS_parentSequenceF45H7
Flanking_sequencesttgaaaatttgaatcagtgacttttggcatttaaacaagtcgaaagctttggcgcgaattcaaatttctcaaagttttttgaaatatgccaaagtgtattgaattacagaaatttgtgattgaaattaaatttttccaaaaatctctaaaaattctgacccaaatttaacatgttttttaataattttgacgctaaatttcaaattttcagagtaaaccaaaaagttaaaaaaaataatggatctcaattttgaattgttctaaaaactttaaaaattttcaggaaaattaacctaaattctgtctgaaaattcacgttttccgttttccgcacgaagaaaaatgtttgcagaaatcaaaaccgccttgccacgtcatcacaacatcctaacaacagtcaaaccggagaacctaaaagtgaacaccgagaaaatcgatataatctcgagctccgacgagccaatcggccgaacagctctcacaaaacgaagtgactcgggcttaggctcaagcctgtctcgttctccaagcggtccacatactcagagaatccgtcagtctcttctaccgtactcaaatgccacgtcatcaagtgcttct
Mapping_targetF45H7
Type_of_mutationSubstitutionTA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00000034From_analysisMillion_mutation_project_reanalysis
WBStrain00004599From_analysisMillion_mutation_project_reanalysis
WBStrain00004602From_analysisSNP_Swan
WGS_Hawaiian_Waterston
WGS_Yanai
Million_mutation_project_reanalysis
WBStrain00004604From_analysisWGS_Pasadena_Quinlan
WBStrain00023139From_analysisMillion_mutation_project_reanalysis
WBStrain00027648From_analysisMillion_mutation_project_reanalysis
WBStrain00027660From_analysisMillion_mutation_project_reanalysis
WBStrain00027662From_analysisMillion_mutation_project_reanalysis
LaboratoryRW
PersonWBPerson6900
WBPerson4037
WBPerson1562
AnalysisWGS_Pasadena_Quinlan
WGS_Yanai
Million_mutation_project_reanalysis
SNP_Swan
WGS_Hawaiian_Waterston
HistoryAcquires_mergeWBVar00562637
WBVar00056040
WBVar00269681
StatusLive
AffectsGeneWBGene00001559
TranscriptF45H7.2d.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF45H7.2d.3:c.2093-53T>A
Intron_number17/23
F45H7.2a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF45H7.2a.1:c.2600-53T>A
Intron_number21/27
F45H7.2d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF45H7.2d.1:c.2093-53T>A
Intron_number20/25
F45H7.2b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF45H7.2b.1:c.2072-53T>A
Intron_number19/25
F45H7.2d.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF45H7.2d.2:c.2093-53T>A
Intron_number18/23
ReferenceWBPaper00038208
WBPaper00005369
MethodWGS_Pasadena_Quinlan