WormBase Tree Display for Variation: WBVar00045181
expand all nodes | collapse all nodes | view schema
WBVar00045181 | Name | Public_name | WBVar00045181 | ||
---|---|---|---|---|---|
Other_name | pas20633 | ||||
uCE3-827 | |||||
haw42330 | |||||
haw142772 | |||||
cewivar00105707 | |||||
F45H7.2d.2:c.2093-53T>A | |||||
F45H7.2d.1:c.2093-53T>A | |||||
F45H7.2d.3:c.2093-53T>A | |||||
F45H7.2b.1:c.2072-53T>A | |||||
F45H7.2a.1:c.2600-53T>A | |||||
HGVSg | CHROMOSOME_III:g.3359116T>A | ||||
Sequence_details | SMap | S_parent | Sequence | F45H7 | |
Flanking_sequences | ttgaaaatttgaatcagtgacttttggcatttaaacaagtcgaaagctttggcgcgaattcaaatttctcaaagttttttgaaatatgccaaagtgtattgaattacagaaatttgtgattgaaattaaatttttccaaaaatctctaaaaattctgacccaaatttaacatgttttttaataattttgacgctaaatttcaaattttcagagtaaaccaaaaagttaaaaaaaataatggatctcaattttgaattgttctaaaaactttaaaaattttcaggaaaattaacctaaatt | ctgtctgaaaattcacgttttccgttttccgcacgaagaaaaatgtttgcagaaatcaaaaccgccttgccacgtcatcacaacatcctaacaacagtcaaaccggagaacctaaaagtgaacaccgagaaaatcgatataatctcgagctccgacgagccaatcggccgaacagctctcacaaaacgaagtgactcgggcttaggctcaagcctgtctcgttctccaagcggtccacatactcagagaatccgtcagtctcttctaccgtactcaaatgccacgtcatcaagtgcttct | |||
Mapping_target | F45H7 | ||||
Type_of_mutation | Substitution | T | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004602 | From_analysis | SNP_Swan | |||
WGS_Hawaiian_Waterston | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
Person | WBPerson6900 | ||||
WBPerson4037 | |||||
WBPerson1562 | |||||
Analysis | WGS_Pasadena_Quinlan | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
SNP_Swan | |||||
WGS_Hawaiian_Waterston | |||||
History | Acquires_merge | WBVar00562637 | |||
WBVar00056040 | |||||
WBVar00269681 | |||||
Status | Live | ||||
Affects | Gene | WBGene00001559 | |||
Transcript | F45H7.2d.3 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F45H7.2d.3:c.2093-53T>A | ||||
Intron_number | 17/23 | ||||
F45H7.2a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F45H7.2a.1:c.2600-53T>A | ||||
Intron_number | 21/27 | ||||
F45H7.2d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F45H7.2d.1:c.2093-53T>A | ||||
Intron_number | 20/25 | ||||
F45H7.2b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F45H7.2b.1:c.2072-53T>A | ||||
Intron_number | 19/25 | ||||
F45H7.2d.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F45H7.2d.2:c.2093-53T>A | ||||
Intron_number | 18/23 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00005369 | |||||
Method | WGS_Pasadena_Quinlan |