WormBase Tree Display for Variation: WBVar00043971
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| WBVar00043971 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00043971 | |||
| Other_name | pas20391 | ||||
| snp_Y53G8B[2] | |||||
| haw41908 | |||||
| cewivar00104988 | |||||
| Y53G8B.4b.1:c.969+286T>G | |||||
| Y53G8B.4a.1:c.1026+286T>G | |||||
| HGVSg | CHROMOSOME_III:g.3113485A>C | ||||
| Sequence_details | SMap | S_parent | Sequence | Y53G8B | |
| Flanking_sequences | gaaatttgggtcccggcacgaaagtagggtactgtagttttcgtggcgggacccaaagtaggcggaacctaggcatgatggatgtcattttaaaggtctcgacaagctttcttttttttaaagaaaacatttaatttctggctaaaaatctggaaatctagaaatttaaaatttttcaaaaaaaaaaaaacaaaaaaaattcggaattcttgcttttcaaaattttaatttttttttaaattttagattcaattcaaatcattaagagctttagaatgaaccccaatatgtctataatat | gagaagtttgggtctcgcaacgaaagtcacacccggggtactgtagttttcgtggcgggacccaaggttggcagaacctaggcaagatggggctcattttaaaggtctcgacaagctgaataagaaaatttgaatgaaaacaaaaaattcctagctaatctaaaaaatttgaaaatttaaaaaattaatttttttaccaaaagaaaaacatttttttcgaaattttttttttaaattaaagtttttaaaatttcactttttctcgatttttctgaaaatttttacctggaaaatgccgat | |||
| Mapping_target | Y53G8B | ||||
| Type_of_mutation | Substitution | A | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004602 | From_analysis | SNP_Wicks | |||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00053928 | |||
| WBVar00247571 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00021820 | |||
| Transcript | Y53G8B.4b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y53G8B.4b.1:c.969+286T>G | ||||
| Intron_number | 5/6 | ||||
| Y53G8B.4a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y53G8B.4a.1:c.1026+286T>G | ||||
| Intron_number | 7/8 | ||||
| Reference | WBPaper00004703 | ||||
| Method | WGS_Pasadena_Quinlan |
