WormBase Tree Display for Variation: WBVar00043636
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WBVar00043636 | Name | Public_name | WBVar00043636 | ||
---|---|---|---|---|---|
Other_name (13) | |||||
HGVSg | CHROMOSOME_I:g.4045898G>A | ||||
Sequence_details | SMap | S_parent | Sequence | C09D1 | |
Flanking_sequences | ccaccaagttatacacattattcatcaattcgattggacaaatacaatatcagacaacacacgacagacgaggatactattgtccttcaacctcaggaaccgggacttccaagtttcaggttagattttgtttaaaaaattttgtgttaaaaaatgtggattaaatatatctcggaatatttaaaattgctgaaataccaaatttattaaattgtttgatttccgtttcaatgtaagttcaattagagaaactggtgacaattggaaaagctcaaaagattctgaacaccagtattcaca | tttcttctcaaaaatatattttttaaaaactgaaattcgaaagcttgagaaacctgagacatgcagtaccaataatcggttctacaaagtgacatgaatatctaataaaattaaatttcagaatcaaaccaaaggactttgaaacttcggagtacgtgcgcaaagcctggctgagggacatcgcagaggagcaggagaaatatggtaagtttcttttttttctggaaaaacccccagagcatctcagagaccattgtcaatagagatcggattcgacgagctcgttaactttgtgtgttc | |||
Mapping_target | C09D1 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004602 | From_analysis | WGS_De_Bono | |||
WGS_Hawaiian_Waterston | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022850 | From_analysis | WGS_De_Bono | |||
Million_mutation_project_reanalysis | |||||
WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | AX | ||||
RW | |||||
Person | WBPerson6900 | ||||
WBPerson4037 | |||||
WBPerson1562 | |||||
Analysis | WGS_Pasadena_Quinlan | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WGS_Hawaiian_Waterston | |||||
History | Acquires_merge | WBVar01343202 | |||
WBVar00536433 | |||||
WBVar00152712 | |||||
WBVar01281363 | |||||
Status | Live | ||||
Affects | Gene | WBGene00006820 | |||
Transcript | C09D1.1b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C09D1.1b.1:c.1278-122G>A | ||||
Intron_number | 8/48 | ||||
C09D1.1o.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C09D1.1o.1:c.1278-122G>A | ||||
Intron_number | 8/32 | ||||
C09D1.1k.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C09D1.1k.1:c.1278-122G>A | ||||
Intron_number | 8/46 | ||||
C09D1.1l.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C09D1.1l.1:c.1278-122G>A | ||||
Intron_number | 8/32 | ||||
C09D1.1n.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C09D1.1n.1:c.1278-122G>A | ||||
Intron_number | 8/46 | ||||
C09D1.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C09D1.1a.1:c.1278-122G>A | ||||
Intron_number | 9/35 | ||||
C09D1.1e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C09D1.1e.1:c.1278-122G>A | ||||
Intron_number | 8/31 | ||||
C09D1.1f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C09D1.1f.1:c.1278-122G>A | ||||
Intron_number | 8/45 | ||||
C09D1.1m.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C09D1.1m.1:c.1278-122G>A | ||||
Intron_number | 8/47 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
Method | WGS_Pasadena_Quinlan |