WormBase Tree Display for Variation: WBVar00043631
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| WBVar00043631 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00043631 | |||
| Other_name (12) | |||||
| HGVSg | CHROMOSOME_I:g.4043220T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | C09D1 | |
| Flanking_sequences | catgcattaattattaatctgattcttgattttttttcaactataataagaccttcatttttgaaatttcatcaatttctgtagttataactatagtcatttgttgaagctgaacagaatgaaattttggcattcttcaactaatttgatttaatttaacatttttgtactgcagtaaaagtattttcgaagaaaaaacgttctcaggaatacatttttaactttttcaccctttcacttcttccgaacgatcgaaaatttattaaaatttaagggaactgttttgaattaattgatttt | agatttttggcatttaaaatttcttcaaaaatatctaaaccattttgttttgtatctctaataatttttgtgataaactattcgattttccgtttttgggtattatgaaatccataattttcatttaattttgatttaaatacttctcatcgcacagtccaggaaatgtttgtttctattatttacagattcaacacgtttatcgttgatttaattgtctggctccacttctaaatattttactgaacctctctaaattctttttgggttttgcgcggtttaattttttgtttaagtcaa | |||
| Mapping_target | C09D1 | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004602 | From_analysis | WGS_De_Bono | |||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00152709 | |||
| WBVar01343199 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006820 | |||
| Transcript | C09D1.1b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D1.1b.1:c.796-1580T>A | ||||
| Intron_number | 5/48 | ||||
| C09D1.1o.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D1.1o.1:c.796-1580T>A | ||||
| Intron_number | 5/32 | ||||
| C09D1.1k.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D1.1k.1:c.796-1580T>A | ||||
| Intron_number | 5/46 | ||||
| C09D1.1l.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D1.1l.1:c.796-1580T>A | ||||
| Intron_number | 5/32 | ||||
| C09D1.1n.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D1.1n.1:c.796-1580T>A | ||||
| Intron_number | 5/46 | ||||
| C09D1.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D1.1a.1:c.796-1580T>A | ||||
| Intron_number | 6/35 | ||||
| C09D1.1e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D1.1e.1:c.796-1580T>A | ||||
| Intron_number | 5/31 | ||||
| C09D1.1f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D1.1f.1:c.796-1580T>A | ||||
| Intron_number | 5/45 | ||||
| C09D1.1m.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C09D1.1m.1:c.796-1580T>A | ||||
| Intron_number | 5/47 | ||||
| Reference | WBPaper00037807 | ||||
| Method | WGS_Pasadena_Quinlan |
