WormBase Tree Display for Variation: WBVar00040374
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| WBVar00040374 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00040374 | ||||
| Other_name | cbs30512 | |||||
| cb30512 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrV:g.18813361C>A | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0129 | ||
| Flanking_sequences | actaagaaatattctcactaagaaagattc | cactaagaacgattctcactaagaa | ||||
| Mapping_target | cb25.fpc0129 | |||||
| Type_of_mutation | Substitution | G | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | GANTC | HinfI | 246 147 134 132 117 96 32 16 16 16 16 16 16 | ||
| AATATT | SspI | 521 383 96 | ||||
| GAWTC | TfiI | 393 134 132 117 96 32 16 16 16 16 16 16 | ||||
| Polymorphic_strain_digest | GANTC | HinfI | 246 147 134 132 117 96 48 16 16 16 16 16 | |||
| AATATT | SspI | 505 383 96 16 | ||||
| GAWTC | TfiI | 393 134 132 117 96 48 16 16 16 16 16 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00027983 | ||||
| Transcript | CBG05555a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG05555a.1:c.219+214G>T | |||||
| Intron_number | 4/34 | |||||
| CBG05555b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG05555b.1:c.219+214G>T | |||||
| Intron_number | 3/32 | |||||
| CBG05555c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG05555c.1:c.219+214G>T | |||||
| Intron_number | 3/32 | |||||
| CBG05555d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG05555d.1:c.219+214G>T | |||||
| Intron_number | 3/30 | |||||
| CBG05555e.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG05555e.1:c.219+214G>T | |||||
| Intron_number | 3/18 | |||||
| CBG05555f.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG05555f.1:c.219+214G>T | |||||
| Intron_number | 3/30 | |||||
| CBG05555f.2 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG05555f.2:c.219+214G>T | |||||
| Intron_number | 3/30 | |||||
| CBG05555f.3 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG05555f.3:c.219+214G>T | |||||
| Intron_number | 3/22 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
