WormBase Tree Display for Variation: WBVar00040349

WBVar00040349 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00040349
    Other_name: cbs30506
      cb30506 Paper_evidence: WBPaper00055507
    HGVSg: chrV:g.18801576C>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0129
    Flanking_sequences: gttccatgaaaagatatgggaattt gtcaactcataaaacgttcttcgta
    Mapping_target: cb25.fpc0129
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 1000
        TCGA EsaBC3I, TaqI, TthHB8I 780 175 45
        AATT Sse9I, TasI, Tsp509I, TspEI 221 191 125 82 68 57 47 43 39 32 30 20 14 13 10 8
      Polymorphic_strain_digest: TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 850 150
        TCGA EsaBC3I, TaqI, TthHB8I 676 175 104 45
        AATT Sse9I, TasI, Tsp509I, TspEI 221 191 125 89 82 68 47 43 39 30 20 14 13 10 8
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00027983
    Transcript: CBG05555a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05555a.1:c.4807-79G>T
        Intron_number: 21/34
      CBG05555b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05555b.1:c.4666-79G>T
        Intron_number: 19/32
      CBG05555c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05555c.1:c.4807-362G>T
        Intron_number: 20/32
      CBG05555d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05555d.1:c.4666-362G>T
        Intron_number: 19/30
      CBG05555f.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05555f.1:c.*375-79G>T
        Intron_number: 20/30
      CBG05555f.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05555f.2:c.*375-362G>T
        Intron_number: 20/30
      CBG05555f.3 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05555f.3:c.*375-362G>T
        Intron_number: 20/22
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP