WormBase Tree Display for Variation: WBVar00039028
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WBVar00039028 | Name | Public_name | WBVar00039028 | ||
---|---|---|---|---|---|
Other_name | haw38928 | ||||
haw140496 | |||||
cewivar00193903 | |||||
Y82E9BR.17b.4:c.236+642C>T | |||||
Y82E9BR.17b.6:c.236+642C>T | |||||
Y82E9BR.17b.5:c.236+642C>T | |||||
Y82E9BR.17b.3:c.236+642C>T | |||||
Y82E9BR.17b.1:c.236+642C>T | |||||
Y82E9BR.17a.1:c.1385+642C>T | |||||
Y82E9BR.17b.2:c.236+642C>T | |||||
HGVSg | CHROMOSOME_III:g.1449333G>A | ||||
Sequence_details | SMap | S_parent | Sequence | Y82E9BR | |
Flanking_sequences | ccgtatcgcacaggtagatattttc | aagtttaatatcattttttgttctc | |||
Mapping_target | Y82E9BR | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00006622 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00006642 | From_analysis | WGS_De_Bono | |||
WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022856 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00560361 | |||
WBVar01257069 | |||||
Status | Live | ||||
Affects | Gene | WBGene00022349 | |||
Transcript | Y82E9BR.17b.6 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y82E9BR.17b.6:c.236+642C>T | ||||
Intron_number | 4/5 | ||||
Y82E9BR.17b.5 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y82E9BR.17b.5:c.236+642C>T | ||||
Intron_number | 5/6 | ||||
Y82E9BR.17b.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y82E9BR.17b.3:c.236+642C>T | ||||
Intron_number | 7/8 | ||||
Y82E9BR.17a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y82E9BR.17a.1:c.1385+642C>T | ||||
Intron_number | 15/16 | ||||
Y82E9BR.17b.4 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y82E9BR.17b.4:c.236+642C>T | ||||
Intron_number | 7/8 | ||||
Y82E9BR.17b.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y82E9BR.17b.2:c.236+642C>T | ||||
Intron_number | 13/14 | ||||
Y82E9BR.17b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y82E9BR.17b.1:c.236+642C>T | ||||
Intron_number | 14/15 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw38928 | ||||
Method | WGS_Hawaiian_Waterston |