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WormBase Tree Display for Variation: WBVar00037963

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Name Class

WBVar00037963EvidencePaper_evidenceWBPaper00038208
NamePublic_nameWBVar00037963
Other_namehaw38715
haw140344
cewivar00193524
Y82E9BR.25.1:c.736-7G>A
Y82E9BR.5.3:c.-12-219C>T
Y82E9BR.5.2:c.-12-219C>T
Y82E9BR.5.1:c.-12-219C>T
HGVSgCHROMOSOME_III:g.1387236C>T
Sequence_detailsSMapS_parentSequenceY82E9BR
Flanking_sequencesccattttggacgcgataccctgcaatttcacttaaaaaaaaaaatatata
Mapping_targetY82E9BR
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisWGS_Hawaiian_Waterston
WGS_Yanai
Million_mutation_project_reanalysis
LaboratoryRW
PersonWBPerson1562
WBPerson4037
AnalysisWGS_Hawaiian_Waterston
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00560209
StatusLive
AffectsGeneWBGene00022338
WBGene00194746
TranscriptY82E9BR.5.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY82E9BR.5.2:c.-12-219C>T
Intron_number1/4
Y82E9BR.25.1VEP_consequencesplice_region_variant,intron_variant
VEP_impactLOW
HGVScY82E9BR.25.1:c.736-7G>A
Intron_number5/5
Y82E9BR.5.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY82E9BR.5.1:c.-12-219C>T
Intron_number1/4
Y82E9BR.5.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY82E9BR.5.3:c.-12-219C>T
Intron_number2/5
ReferenceWBPaper00038208
Remark[20081124 db] this Variation was previously named hw38715
MethodWGS_Hawaiian_Waterston