WormBase Tree Display for Variation: WBVar00033846
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| WBVar00033846 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00033846 | |||
| Other_name | pas18366 | ||||
| cewivar00104644 | |||||
| Y55D5A.5c.1:c.*272G>A | |||||
| Y55D5A.5a.1:c.*272G>A | |||||
| HGVSg | CHROMOSOME_III:g.2995647C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y55D5A | |
| Flanking_sequences | atatttaatcgattttaagaaattttggaaaaaaatcgtcaaaaatcgataaaatattgattattttgtcgaaaatcaattttttcatcgaattatcgattttcagaaaaaaaaatccaaattttaccggaatttcgataaatcaaaatttttttcaaaaatcgaaaaattatcgatttttgcaaaaagaaaatcgatacattatcgttttttaccgggaaattcaaaaattatcgattttaagctcaaaaaatcgacaaaaattcaatttttcacatgaaattttcgtcagcgaacgta | aaactcagaaaaaaatcttgtttgaaagacactatctatggaattcacgggaagtttttgatggttttttgttgcaagggggctcttgtcttaggactcgtcacaatgtatatggggggtaataacaaaaaaaaatacagagatttgaaaaatggggtaaaattattcagaatttttcagaaaaaatctgaaaaaaaatccgatattcgtgtagagatatgataatgtgggagataatttataatttaagaggcgggattttttgggggtttcagacaagtggatgatgctcattatcct | |||
| Mapping_target | Y55D5A | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (71) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01444714 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00000898 | |||
| Transcript | Y55D5A.5a.1 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55D5A.5a.1:c.*272G>A | ||||
| cDNA_position | 5911 | ||||
| Exon_number | 19/19 | ||||
| Y55D5A.5c.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55D5A.5c.1:c.*272G>A | ||||
| cDNA_position | 6222 | ||||
| Exon_number | 21/21 | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
