WormBase Tree Display for Variation: WBVar00028741
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| WBVar00028741 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00028741 | |||
| Other_name | pas17345 | ||||
| haw40602 | |||||
| cewivar00103298 | |||||
| H14E04.2b.1:c.764+32T>C | |||||
| H14E04.2a.1:c.755+32T>C | |||||
| H14E04.2d.1:c.389+32T>C | |||||
| H14E04.2c.1:c.776+32T>C | |||||
| HGVSg | CHROMOSOME_III:g.2379900T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | H14E04 | |
| Flanking_sequences | tccggctcagaattggaagaagtcaccgtcggacacgtacaggaaatactggaacacgcttttcccaatggattgccaacttgtgcaatatccgaatgcttgagatgctccgacgaggagacgttggcctttttggctgagctggaaacttctggaatcgttcgaatggttgaagacgagtggattcgtgttgatacgaaaaaagttgatgaaagtattgaagcacatcggaatgcggctgctgcagcatcaacttctgctggaaatgggtacggaaaagctgaaaaactcggcgatttt | taccgaaaaattgggcaaaaacgacgaattttgaccctttttccaggaaatctggctatttttgtgttcagcaccgcgagagcttcaaaatgacccccatatcggttatattccgttcactttgaaaattctgggtcctgccacgaaaactacagtaccccccttcgcggcgagacccagaattttgaaatgttaacggaacataggcaatatgggtgtcatttgaaaggtctcgacacgctgaattcgaatttttgtataaaaagctttgatttcccagaatgaaattgaaaaataatt | |||
| Mapping_target | H14E04 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | |||
| Million_mutation_project_reanalysis | |||||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00022850 | From_analysis | WGS_De_Bono | |||
| WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00047398 | |||
| WBVar01327558 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00019199 | |||
| Transcript | H14E04.2a.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | H14E04.2a.1:c.755+32T>C | ||||
| Intron_number | 6/11 | ||||
| H14E04.2c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | H14E04.2c.1:c.776+32T>C | ||||
| Intron_number | 7/12 | ||||
| H14E04.2b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | H14E04.2b.1:c.764+32T>C | ||||
| Intron_number | 6/11 | ||||
| H14E04.2d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | H14E04.2d.1:c.389+32T>C | ||||
| Intron_number | 3/8 | ||||
| Reference | WBPaper00037807 | ||||
| Method | WGS_Pasadena_Quinlan |
