WormBase Tree Display for Variation: WBVar00028444

WBVar00028444 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00028444
    Other_name: cbs23990
      cb23990 Paper_evidence: WBPaper00055507
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4140
    Flanking_sequences: aaataattgaacttcgaaataaggc tccattcggtcggcaaattcagccg
    Mapping_target: cb25.fpc4140
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: AGGCCT AatI, Eco147I, PceI, SseBI, StuI 501 499
        GACGTC AatII, ZraI 592 408
        GRCGYC AcyI, BsaHI, BstACI, Hin1I, Hsp92I 589 411
        AGCT AluI 540 436 24
        CCNNNNNNNGG Bsc4I, BseLI, BsiYI, BslI 503 404 93
        GGCC BshFI, BshI, BsuRI, HaeIII, PalI 501 499
        RGCY CviJI, CviTI 345 212 185 100 54 39 24 24 17
        WGGCCW HaeI 501 499
        ACGT HpyCH4IV, MaeII, TaiI, TscI 411 347 211 31
      Polymorphic_strain_digest: AGGCCT AatI, Eco147I, PceI, SseBI, StuI 1000
        GACGTC AatII, ZraI 1000
        GRCGYC AcyI, BsaHI, BstACI, Hin1I, Hsp92I 1000
        AGCT AluI 436 364 176 24
        CCNNNNNNNGG Bsc4I, BseLI, BsiYI, BslI 907 93
        GGCC BshFI, BshI, BsuRI, HaeIII, PalI 1000
        RGCY CviJI, CviTI 323 212 185 100 54 39 24 24 22 17
        WGGCCW HaeI 1000
        ACGT HpyCH4IV, MaeII, TaiI, TscI 442 347 211
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP