WormBase Tree Display for Variation: WBVar00027791
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WBVar00027791 | Name | Public_name | WBVar00027791 | ||
---|---|---|---|---|---|
Other_name | pas17155 | ||||
cewivar00302470 | |||||
C45E1.1a.1:c.145+501C>A | |||||
C45E1.1b.1:c.145+501C>A | |||||
C45E1.1a.2:c.145+501C>A | |||||
C45E1.1c.1:c.163+501C>A | |||||
HGVSg | CHROMOSOME_I:g.3105013C>A | ||||
Sequence_details | SMap | S_parent | Sequence | C45E1 | |
Flanking_sequences | attttttgtcgttatttcgttaacttaagagcactttcagacgataggtaattgatagacaaatatcggctagaaattacctaagtcgccgaaaaaacgtcacaaattacataaaatatgcaaaaaacagccaataaaatcaatttccgaccggtgtacatcggaaaatgggaaaaattgcagatttttgctaaaactaggaaaaattccgtatttttgagattttcagtcaaaaaatacctcaaaatctggcaaattgctcaaaaatgaacatttttatacagaaaaatcaggaaaaaa | ggtccagcaagaaccagggcggaatattcgattttcttgattttaaacaatttttttctaatttttactgcattttcgggtaatttcgaccaaattatagcaaaatccgctgaatttcgagctaaaaacaaaacaaaaagtgttggcgtgacacatgtgtgctgtgactaccatctaaacaatgcactaatgcgttatggcacatagtaaatgaagtgaactgagaatttggaggagaaagcttgtgtgagccctctccagagagaaaagggtttctctttttaatgctccaacggctct | |||
Mapping_target | C45E1 | ||||
Type_of_mutation | Substitution | C | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | ||
WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00003654 | |||
Transcript | C45E1.1b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C45E1.1b.1:c.145+501C>A | ||||
Intron_number | 1/6 | ||||
C45E1.1c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C45E1.1c.1:c.163+501C>A | ||||
Intron_number | 2/8 | ||||
C45E1.1a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C45E1.1a.2:c.145+501C>A | ||||
Intron_number | 3/10 | ||||
C45E1.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C45E1.1a.1:c.145+501C>A | ||||
Intron_number | 2/9 | ||||
Method | WGS_Pasadena_Quinlan |