WormBase Tree Display for Variation: WBVar00022396
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| WBVar00022396 | Name | Public_name | WBVar00022396 | ||
|---|---|---|---|---|---|
| Other_name | pas16076 | ||||
| snp_F53A3[2] | |||||
| haw141173 | |||||
| cewivar00022550 | |||||
| F53A3.2.1:c.720C>T | |||||
| CE40206:p.Phe240= | |||||
| HGVSg | CHROMOSOME_III:g.1949066G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | F53A3 | |
| Flanking_sequences | cagctgagaaaatctcaaaatttcttttttttttgccagaaaaaattgatttttttttgagtatttccaaatttctaggttcaatgaaaaatatttaaaaattgtataaaaacgcctaaaattgcagatttcagacatttcagataatttttcgatgaaaattctgaaaataacttggaattttgaatattttcgcttccgtacagtgatattaagcatttcttgaatgcgatttcccatttttccgccaaatcctcgaacatctccgattggcgtaagccggagaatttctcgaacata | aaccacggaattaacgtttgttggcgtggtttatgccgggcgcacaccaatttcgccatcattttgttgtttccgacgcctgaaaatggaaaattgcgatttttgggcgaatttttccccccaaaaaatgaatttttctggattttccggcaaaatccatacccgccgagcaaaaaaactgggtttcctcgtgaatttgttgccgaatttgctctacagtgaccgcggcaatcagtaaaagcaggttttccgtgcaatttctcgcattttcaatatattccagcagcacatcttctcgta | |||
| Mapping_target | F53A3 | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (27) | |||||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| History | Acquires_merge | WBVar00561038 | |||
| WBVar01326493 | |||||
| WBVar00244974 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00018721 | |||
| Transcript | F53A3.2.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | F53A3.2.1:c.720C>T | ||||
| HGVSp | CE40206:p.Phe240= | ||||
| cDNA_position | 732 | ||||
| CDS_position | 720 | ||||
| Protein_position | 240 | ||||
| Exon_number | 6/11 | ||||
| Codon_change | ttC/ttT | ||||
| Amino_acid_change | F | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00004703 | |||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
