WormBase Tree Display for Variation: WBVar00022074
expand all nodes | collapse all nodes | view schema
| WBVar00022074 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00022074 | ||||
| Other_name | cbs20307 | |||||
| cb20307 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrX:g.3681329T>A | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0045 | ||
| Flanking_sequences | tattgaaagatgcatctccacgaaa | tagcgcccagagaaaaaaaatacga | ||||
| Mapping_target | cb25.fpc0045 | |||||
| Type_of_mutation | Substitution | T | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | GTAC | AfaI, Csp6I, RsaI | 405 263 198 134 | ||
| GCGC | AspLEI, BstHHI, CfoI, HhaI, Hin6I, HinP1I, HspAI | 68 137 | ||||
| RGCGCY | Bsp143II, BstH2I, HaeII, LpnI | 506 494 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 798 102 50 50 | ||||
| CAC | HindI | 97 94 94 88 76 75 71 63 62 39 36 36 26 26 22 22 17 17 12 10 9 4 2 2 | ||||
| TTAA | MseI, Tru1I, Tru9I | 260 191 144 120 102 94 89 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 257 214 140 71 46 41 37 33 27 26 25 24 16 15 8 8 7 5 | ||||
| WGTACW | TatI | 405 261 198 136 | ||||
| Polymorphic_strain_digest | GTAC | AfaI, Csp6I, RsaI | 461 405 134 | |||
| GCGC | AspLEI, BstHHI, CfoI, HhaI, Hin6I, HinP1I, HspAI | 632 368 | ||||
| RGCGCY | Bsp143II, BstH2I, HaeII, LpnI | 1000 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 748 102 50 50 50 | ||||
| CAC | HindI | 188 97 88 76 75 71 63 62 39 36 36 28 26 22 22 17 17 12 10 9 4 2 | ||||
| TTAA | MseI, Tru1I, Tru9I | 260 191 144 102 94 93 89 27 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 471 140 71 46 41 37 33 27 26 25 24 16 15 8 8 7 5 | ||||
| WGTACW | TatI | 459 405 136 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00025136 | ||||
| Transcript | CBG01980b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG01980b.1:c.146-6263A>T | |||||
| Intron_number | 3/13 | |||||
| CBG01980c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG01980c.1:c.148+856A>T | |||||
| Intron_number | 2/12 | |||||
| CBG01980d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG01980d.1:c.146-6263A>T | |||||
| Intron_number | 3/14 | |||||
| CBG01980f.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG01980f.1:c.148+856A>T | |||||
| Intron_number | 2/13 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
