WormBase Tree Display for Variation: WBVar00018250
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| WBVar00018250 | Evidence | Paper_evidence | WBPaper00038208 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00018250 | |||
| Other_name | haw84748 | ||||
| haw171365 | |||||
| cewivar00244889 | |||||
| C01G10.11b.1:c.*397A>T | |||||
| C01G10.11e.1:c.269-432A>T | |||||
| C01G10.11c.1:c.770-432A>T | |||||
| C01G10.11a.1:c.1043-432A>T | |||||
| C01G10.11f.1:c.1073-432A>T | |||||
| C01G10.11d.1:c.623-432A>T | |||||
| HGVSg | CHROMOSOME_V:g.15079186A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | C01G10 | |
| Flanking_sequences | caaaaaatactgtctcgagacgaaa | ttgttgttaaatgcgaaaaggtgag | |||
| Mapping_target | C01G10 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00591230 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00006808 | |||
| WBGene00305285 | |||||
| Transcript | C01G10.11f.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C01G10.11f.1:c.1073-432A>T | ||||
| Intron_number | 10/11 | ||||
| C01G10.11d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C01G10.11d.1:c.623-432A>T | ||||
| Intron_number | 4/4 | ||||
| C01G10.11e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C01G10.11e.1:c.269-432A>T | ||||
| Intron_number | 2/2 | ||||
| C01G10.11b.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C01G10.11b.1:c.*397A>T | ||||
| cDNA_position | 1518 | ||||
| Exon_number | 10/10 | ||||
| C01G10.11a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C01G10.11a.1:c.1043-432A>T | ||||
| Intron_number | 9/10 | ||||
| C25D7.19 | |||||
| C01G10.11c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C01G10.11c.1:c.770-432A>T | ||||
| Intron_number | 6/6 | ||||
| Reference | WBPaper00038208 | ||||
| Remark | [20081124 db] this Variation was previously named hw84748 | ||||
| Method | WGS_Hawaiian_Waterston |
