WormBase Tree Display for Variation: WBVar00018078
expand all nodes | collapse all nodes | view schema
WBVar00018078 | Evidence | Paper_evidence | WBPaper00037807 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00018078 | |||
Other_name | haw34738 | ||||
cewivar00144894 | |||||
Y54E2A.2.3:c.231+389G>C | |||||
Y54E2A.2.2:c.231+389G>C | |||||
Y54E2A.2.4:c.231+389G>C | |||||
Y54E2A.2.1:c.231+389G>C | |||||
HGVSg | CHROMOSOME_II:g.14751870C>G | ||||
Sequence_details | SMap | S_parent | Sequence | Y54E2A | |
Flanking_sequences | aagcatttttcgtttttttcgtcgt | ttctgtttttttaatgtgttgaaat | |||
Mapping_target | Y54E2A | ||||
Type_of_mutation | Substitution | C | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004602 | From_analysis | WGS_De_Bono | |||
WGS_Hawaiian_Waterston | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01385289 | |||
Status | Live | ||||
Affects | Gene | WBGene00013188 | |||
Transcript | Y54E2A.2.2 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y54E2A.2.2:c.231+389G>C | ||||
Intron_number | 2/7 | ||||
Y54E2A.2.4 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54E2A.2.4:c.231+389G>C | ||||
Intron_number | 2/7 | ||||
Y54E2A.2.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54E2A.2.1:c.231+389G>C | ||||
Intron_number | 1/5 | ||||
Y54E2A.2.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54E2A.2.3:c.231+389G>C | ||||
Intron_number | 2/7 | ||||
Reference | WBPaper00037807 | ||||
Remark | [20081124 db] this Variation was previously named hw34738 | ||||
Method | WGS_Hawaiian_Waterston |