WormBase Tree Display for Variation: WBVar00017690

WBVar00017690 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00017690
    Other_name: snp_H12D21[2]
      haw84636
      cewivar00244750
      H12D21.7c.2:c.668-13G>A
      H12D21.7c.1:c.668-13G>A
      H12D21.7a.1:c.641-13G>A
      H12D21.7b.2:c.779-13G>A
      H12D21.7b.1:c.779-13G>A
    HGVSg: CHROMOSOME_V:g.14898597G>A
  Sequence_details: SMap: S_parent: Sequence: H12D21
    Flanking_sequences: atctcaacaaaaattaaacaaaaat tcatttttccagaagccaccggatc
    Mapping_target: H12D21
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
          WGS_Hawaiian_Waterston
          Million_mutation_project_reanalysis
      WBStrain00022850 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022886 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023072 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023139 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023191 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027648 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027660 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027662 From_analysis: Million_mutation_project_reanalysis
    Laboratory: RW
    Person: WBPerson1562
    Analysis: WGS_Hawaiian_Waterston
      Million_mutation_project_reanalysis
      SNP_Wicks
    History: Acquires_merge: WBVar00245334
    Status: Live
  Affects: Gene: WBGene00010383
    Transcript: H12D21.7a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: H12D21.7a.1:c.641-13G>A
        Intron_number: 5/7
      H12D21.7b.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: H12D21.7b.2:c.779-13G>A
        Intron_number: 5/6
      H12D21.7b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: H12D21.7b.1:c.779-13G>A
        Intron_number: 6/7
      H12D21.7c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: H12D21.7c.1:c.668-13G>A
        Intron_number: 7/9
      H12D21.7c.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: H12D21.7c.2:c.668-13G>A
        Intron_number: 6/8
  Reference: WBPaper00004703
  Remark: [20081124 db] this Variation was previously named hw84636
  Method: WGS_Hawaiian_Waterston