WormBase Tree Display for Variation: WBVar00017481
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| WBVar00017481 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00017481 | |||
| Other_name | pas15093 | ||||
| snp_F56B6[3] | |||||
| haw101501 | |||||
| cewivar00056212 | |||||
| F56B6.5a.2:c.448-30G>A | |||||
| F56B6.5b.1:c.448-30G>A | |||||
| F56B6.5d.1:c.478-30G>A | |||||
| F56B6.5c.1:c.478-30G>A | |||||
| F56B6.5a.1:c.448-30G>A | |||||
| HGVSg | CHROMOSOME_X:g.3529926G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | F56B6 | |
| Flanking_sequences | aaacaaattcacaattttcagggaaatacgcatctgtacttttcgtcgtacttctagccgctgatcgatacatcgcgatgtgtaaaagtgatttgtgcggcagatataggttggtgcatcacaaaataattgaaaaaccctgaaataaaaacactcctacgtttagaacttatcgcacagccatcttcctgagcggtcttgcgtggatcgccgcgtttatctgcagtcttcctctctacgtgtacgccgatgaggtaatttagtgtctaaatttgaaaaaaacaaaacaaaatctgattg | aaaacacacgagcaaatcataaattacagataaaagtacgtatgagaccgaagaatggtacagattcgatagagaacaatcatacattgtgtattgctcattggccaagtccaccacacgcacagtggtacgtttagacatgacccttcatatattatgccagttttgcatttttttttctctctttagaaacgaggaaactaagaggaaagctgaacaaattggctattctaggacctattttcaagagtgggctcatccttaactaattcttttcaggtatatctctgtgtgctcggt | |||
| Mapping_target | F56B6 | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (41) | |||||
| Laboratory | RW | ||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00077141 | |||
| WBVar00245156 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006864 | |||
| Transcript | F56B6.5d.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F56B6.5d.1:c.478-30G>A | ||||
| Intron_number | 5/10 | ||||
| F56B6.5c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F56B6.5c.1:c.478-30G>A | ||||
| Intron_number | 5/10 | ||||
| F56B6.5a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F56B6.5a.2:c.448-30G>A | ||||
| Intron_number | 6/12 | ||||
| F56B6.5b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F56B6.5b.1:c.448-30G>A | ||||
| Intron_number | 5/11 | ||||
| F56B6.5a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F56B6.5a.1:c.448-30G>A | ||||
| Intron_number | 5/11 | ||||
| Reference | WBPaper00004703 | ||||
| Method | WGS_Pasadena_Quinlan |
