WormBase Tree Display for Variation: WBVar00014681
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| WBVar00014681 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00014681 | |||
| Other_name | pas14533 | ||||
| haw1754 | |||||
| cewivar00068098 | |||||
| Y48G8AL.1a.2:c.1239T>G | |||||
| CE49524:p.Ser37= | |||||
| CE49497:p.Ser82= | |||||
| Y48G8AL.1b.1:c.246T>G | |||||
| CE29116:p.Ser413= | |||||
| Y48G8AL.1a.1:c.1239T>G | |||||
| Y48G8AL.1c.1:c.111T>G | |||||
| HGVSg | CHROMOSOME_I:g.1234526T>G | ||||
| Sequence_details | SMap | S_parent | Sequence | Y48G8AL | |
| Flanking_sequences | aaattgaatgagataatctaccaatatatatgcaataaagggcaataatttcaaaaaagtcaacttcggatagattcgacacacagaaatatgggaaaaattcgagattttagctgaattcagtgaaattttgaaccaccataaaaaatttttttgaaaaccttttgagcagttttcattacttttgagcaaagttttggtcgatacgttcaaaatcgtctgaacctagttagtcctcctttaaatatatataacttcaatattcagactaatcgaatcagtattctcatcactggcctc | atgaatatgtcattcttgtataaagatgaacgtcgttataatgtcggattctgttttgaacggtctcatggaattgatatggatcaagttatggaggcatttatgctttttgatgaatatccaatgaaacggcagtatatggaattggtaatacatgaaacaattggaaaaatgctttttttttggtcgataattttctaaatttttaataagtttttttttgcggaaaaaattaatttgaaattagtttttttgcgaatggtctcgtaaaattaaggtacctaaatttcacatctgttc | |||
| Mapping_target | Y48G8AL | ||||
| Type_of_mutation | Substitution | T | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (32) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00148504 | |||
| WBVar01277416 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00021685 | |||
| Transcript | Y48G8AL.1b.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y48G8AL.1b.1:c.246T>G | ||||
| HGVSp | CE49497:p.Ser82= | ||||
| cDNA_position | 246 | ||||
| CDS_position | 246 | ||||
| Protein_position | 82 | ||||
| Exon_number | 3/13 | ||||
| Codon_change | tcT/tcG | ||||
| Amino_acid_change | S | ||||
| Y48G8AL.1c.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y48G8AL.1c.1:c.111T>G | ||||
| HGVSp | CE49524:p.Ser37= | ||||
| cDNA_position | 111 | ||||
| CDS_position | 111 | ||||
| Protein_position | 37 | ||||
| Exon_number | 2/12 | ||||
| Codon_change | tcT/tcG | ||||
| Amino_acid_change | S | ||||
| Y48G8AL.1a.2 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y48G8AL.1a.2:c.1239T>G | ||||
| HGVSp | CE29116:p.Ser413= | ||||
| cDNA_position | 1242 | ||||
| CDS_position | 1239 | ||||
| Protein_position | 413 | ||||
| Exon_number | 9/20 | ||||
| Codon_change | tcT/tcG | ||||
| Amino_acid_change | S | ||||
| Y48G8AL.1a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y48G8AL.1a.1:c.1239T>G | ||||
| HGVSp | CE29116:p.Ser413= | ||||
| cDNA_position | 1249 | ||||
| CDS_position | 1239 | ||||
| Protein_position | 413 | ||||
| Exon_number | 9/20 | ||||
| Codon_change | tcT/tcG | ||||
| Amino_acid_change | S | ||||
| Reference | WBPaper00037807 | ||||
| Method | WGS_Pasadena_Quinlan |
