WormBase Tree Display for Variation: WBVar00012326
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| WBVar00012326 | Name | Public_name | WBVar00012326 | ||
|---|---|---|---|---|---|
| Other_name | pas14062 | ||||
| snp_F46F5[5] | |||||
| haw16947 | |||||
| cewivar00077554 | |||||
| CE19426:p.Leu152= | |||||
| F46F5.10.1:c.456G>A | |||||
| HGVSg | CHROMOSOME_II:g.824418G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | F46F5 | |
| Flanking_sequences | ggaaaacgtttcaattgtgattggttgagcactttagaggatatgagtaagaaaatcaatgaaattatattcgagtttttttgaattacagaattagttgatgctccagatcaagaaatggttgatatgtcgaatccatcacgtaatgaatcagatgttatatttgtatctgccatttcatcaaaccacattggaaattttaaccaaatggtatgtattattgaaccacttttaattaaaaagattaaactttcagaacaagctgctaatccaacacttcccacatcaaaaagtcttatt | tattctctggatctatcagataatgaacttgaaacattggataagaatgttatcattcgaaagttcaattatgcaaaatatccaaattatgtgcggaatttgaaggaatatcgatttaaagcattgattttggcggtactttaacataatattcttgttttaagacttcattcaggaagtgataagtgaatattcaaatgtttggtggctcgatgctcataatagatggctccaaccaaaaccattgagttatatgtatgaagaaatggctcaatgttataataatgatgattgtaaaaa | |||
| Mapping_target | F46F5 | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (14) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00163697 | |||
| WBVar01358799 | |||||
| WBVar01292932 | |||||
| WBVar00244855 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00018501 | |||
| Transcript | F46F5.10.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | F46F5.10.1:c.456G>A | ||||
| HGVSp | CE19426:p.Leu152= | ||||
| cDNA_position | 456 | ||||
| CDS_position | 456 | ||||
| Protein_position | 152 | ||||
| Exon_number | 4/8 | ||||
| Codon_change | ttG/ttA | ||||
| Amino_acid_change | L | ||||
| Reference | WBPaper00004703 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
