WormBase Tree Display for Variation: WBVar00012074
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| WBVar00012074 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00012074 | ||||
| Other_name | cbs10557 | |||||
| cb10557 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrV:g.18799292T>G | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0129 | ||
| Flanking_sequences | gtaaaacaggcaaatttaaaaactt | aacataaaaggtgatatgggttagt | ||||
| Mapping_target | cb25.fpc0129 | |||||
| Type_of_mutation | Substitution | A | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | GTMKAC | AccI, FblI, XmiI | 916 84 | ||
| TTTAAA | AhaIII, DraI | 491 439 70 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 500 283 156 61 | ||||
| CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 267 243 204 135 93 38 20 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 494 293 93 59 21 16 15 9 | ||||
| GTYRAC | HincII, HindII | 513 318 83 45 41 | ||||
| GTNNAC | Hpy8I | 513 318 83 45 26 15 | ||||
| CGWCG | Hpy99I | 933 67 | ||||
| TTAA | MseI, Tru1I, Tru9I | 274 177 164 99 99 84 61 33 9 | ||||
| GTCGAC | SalI | 915 85 | ||||
| Polymorphic_strain_digest | GTMKAC | AccI, FblI, XmiI | 1000 | |||
| TTTAAA | AhaIII, DraI | 491 438 71 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 500 283 217 | ||||
| CATG | CviAII, FatI, HpyCH4I, Hsp92II, NlaIII | 263 243 204 135 93 38 20 4 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 494 293 117 59 21 16 | ||||
| GTYRAC | HincII, HindII | 596 318 45 41 | ||||
| GTNNAC | Hpy8I | 596 318 45 26 15 | ||||
| CGWCG | Hpy99I | 1000 | ||||
| TTAA | MseI, Tru1I, Tru9I | 274 176 164 99 99 84 71 33 | ||||
| GTCGAC | SalI | 1000 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00027983 | ||||
| Transcript | CBG05555a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG05555a.1:c.5989-279A>C | |||||
| Intron_number | 24/34 | |||||
| CBG05555b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG05555b.1:c.5883+137A>C | |||||
| Intron_number | 23/32 | |||||
| CBG05555c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG05555c.1:c.5997+137A>C | |||||
| Intron_number | 23/32 | |||||
| CBG05555d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG05555d.1:c.5821-279A>C | |||||
| Intron_number | 21/30 | |||||
| CBG05555f.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG05555f.1:c.*1557-279A>C | |||||
| Intron_number | 23/30 | |||||
| CBG05555f.2 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG05555f.2:c.*1565+137A>C | |||||
| Intron_number | 23/30 | |||||
| CBG05555f.3 | VEP_consequence | 3_prime_UTR_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG05555f.3:c.*1702A>C | |||||
| cDNA_position | 6136 | |||||
| Exon_number | 23/23 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
