WormBase Tree Display for Variation: WBVar00006341
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| WBVar00006341 | Name | Public_name | WBVar00006341 | ||
|---|---|---|---|---|---|
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_III:g.743332A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | T17H7 | |
| Flanking_sequences | tcttatagtcaccagatcctctgggtagacttccagtttttccaaggttcaactcagaattcggcttctgctctccaattttatagttcggagtgattccgatcacatttccatcttgctctcttccttgtttagtcgatgggaagtcctcctgaaaatttaaagtattttcaacatgaatggtgaaagaattcttattgtcatatctgcttacaaacaattgcagcttttgcataagctgactcgatattcgcttctggggtggtttatagatttccaccattgtctgaagcacaatat | ttctgttgcgcctgggattttacagaatttcgagaaaagttgaatataagaaaagggcaataaaaaatgagtatttctgaacattaaagggggagtagagtttattagtatttcgcttgaaaaaacttaaactggtcaaaaaccgccaattttcacaatgagacttcacaaaaaattttcgaaaatttttatggcgggttaaaatttcgaaaactaaagagccaaatttatagaggactagaggtaaactaacattaaatttaaactggtgaatgagacttaaccaactttatttatcat | |||
| Mapping_target | T17H7 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (30) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00031468 | |||
| WBVar01389502 | |||||
| WBVar01255064 | |||||
| WBVar00240525 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00003936 | |||
| Transcript | T17H7.4k.1 | VEP_consequence | 5_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T17H7.4k.1:c.-18T>A | ||||
| cDNA_position | 12 | ||||
| Exon_number | 1/19 | ||||
| T17H7.4g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T17H7.4g.1:c.-684-150T>A | ||||
| Intron_number | 2/18 | ||||
| T17H7.4c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T17H7.4c.1:c.88-150T>A | ||||
| Intron_number | 1/17 | ||||
| T17H7.4g.2 | VEP_consequence | 5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T17H7.4g.2:c.-771T>A | ||||
| cDNA_position | 13 | ||||
| Exon_number | 1/18 | ||||
| T17H7.4b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T17H7.4b.1:c.88-150T>A | ||||
| Intron_number | 1/15 | ||||
| T17H7.4j.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T17H7.4j.1:c.247-150T>A | ||||
| Intron_number | 4/20 | ||||
| T17H7.4a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T17H7.4a.1:c.88-150T>A | ||||
| Intron_number | 2/18 | ||||
| Reference | WBPaper00004703 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
