WormBase Tree Display for Variation: WBVar00005468

WBVar00005468 Name: Public_name: WBVar00005468
    Other_name: pas11375
      haw32216
      haw135501
      cewivar00097976
      Y48C3A.5d.1:c.7-622A>G
      Y48C3A.5b.1:c.142-622A>G
      Y48C3A.5a.1:c.142-622A>G
    HGVSg: CHROMOSOME_II:g.13277553A>G
  Sequence_details: SMap: S_parent: Sequence: Y48C3A
    Flanking_sequences: taaggtaggtgcctaggtaggcttg taattaataccttaatatgtgccta
    Mapping_target: Y48C3A
    Type_of_mutation: Substitution: A G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain (28)
    Laboratory: RW
      AX
    Person: WBPerson1562
      WBPerson6900
      WBPerson4037
    Analysis: WGS_Hawaiian_Waterston
      WGS_De_Bono
      WGS_Yanai
      Million_mutation_project_reanalysis
      WGS_Pasadena_Quinlan
    History: Acquires_merge: WBVar00106516
        WBVar01316335
        WBVar01381354
        WBVar01249761
        WBVar00555366
    Status: Live
  Affects: Gene: WBGene00012989
    Transcript: Y48C3A.5d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y48C3A.5d.1:c.7-622A>G
        Intron_number: 1/9
      Y48C3A.5b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y48C3A.5b.1:c.142-622A>G
        Intron_number: 1/11
      Y48C3A.5a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y48C3A.5a.1:c.142-622A>G
        Intron_number: 1/10
  Reference: WBPaper00038208
    WBPaper00037807
  Remark: [20081124 db] this Variation was previously named hw32216
  Method: WGS_Hawaiian_Waterston