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WormBase Tree Display for Variation: WBVar00005443

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Name Class

WBVar00005443NamePublic_nameWBVar00005443
Other_namepas42871
haw32211
haw135497
cewivar00097972
Y48C3A.5d.1:c.7-1980T>A
Y48C3A.5b.1:c.142-1980T>A
Y48C3A.5a.1:c.142-1980T>A
HGVSgCHROMOSOME_II:g.13276195T>A
Sequence_detailsSMapS_parentSequenceY48C3A
Flanking_sequencescgaaaatattaaatttaatttaattaattacagtaatactccatatttaa
Mapping_targetY48C3A
Type_of_mutationSubstitutionTA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (34)
LaboratoryRW
AX
PersonWBPerson1562
WBPerson6900
WBPerson4037
AnalysisWGS_Hawaiian_Waterston
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
WGS_Pasadena_Quinlan
HistoryAcquires_mergeWBVar00555362
WBVar01249753
WBVar00231095
WBVar01381349
WBVar01316326
StatusLive
AffectsGeneWBGene00012989
TranscriptY48C3A.5d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48C3A.5d.1:c.7-1980T>A
Intron_number1/9
Y48C3A.5b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48C3A.5b.1:c.142-1980T>A
Intron_number1/11
Y48C3A.5a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48C3A.5a.1:c.142-1980T>A
Intron_number1/10
ReferenceWBPaper00038208
WBPaper00037807
Remark[20081124 db] this Variation was previously named hw32211
MethodWGS_Hawaiian_Waterston