WormBase Tree Display for Variation: WBVar00004424

WBVar00004424 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00004424
    Other_name: cbs3969
      cb3969 Paper_evidence: WBPaper00055507
    HGVSg: chrIV:g.11857889T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4069d
    Flanking_sequences: aaatggagagcgacttggtgttcat tctcttcaagaaatcccatccacag
    Mapping_target: cb25.fpc4069d
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: AGCT AluI 258 222 186 176 58 51 34 15
        GGNCC AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI 765 235
        RGCY CviJI, CviTI 190 181 176 102 67 58 51 44 41 34 24 17 15
        WGGCCW HaeI 918 82
        CAC HindI 119 95 93 65 53 52 46 45 34 34 31 30 28 28 27 26 23 22 20 15 14 12 11 10 10 10 8 6 5 5 5 4 3 3 2 2 2 2
        TCNGA Hpy188I 330 234 150 142 60 49 25 10
        CMGCKG MspA1I, NspBII 684 316
        CAGCTG PvuII 684 316
      Polymorphic_strain_digest: AGCT AluI 292 222 186 176 58 51 15
        GGNCC AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI 765 152 83
        RGCY CviJI, CviTI 181 176 175 102 78 67 58 51 41 24 17 15 15
        WGGCCW HaeI 1000
        CAC HindI 119 95 93 65 64 62 46 45 34 34 30 28 28 27 26 23 22 20 20 15 14 12 11 10 10 8 6 5 5 5 4 3 3 2 2 2 2
        TCNGA Hpy188I 234 188 150 142 142 60 49 25 10
        CMGCKG MspA1I, NspBII 1000
        CAGCTG PvuII 1000
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00037204
    Transcript: CBG17633a.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: CBG17633a.1:c.423T>C
        HGVSp: CBP34840.1:p.Ile141%3D
        cDNA_position: 817
        CDS_position: 423
        Protein_position: 141
        Exon_number: 5/11
        Codon_change: atT/atC
        Amino_acid_change: I
      CBG17633b.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: CBG17633b.1:c.456T>C
        HGVSp: CBP42870.1:p.Ile152%3D
        cDNA_position: 608
        CDS_position: 456
        Protein_position: 152
        Exon_number: 5/11
        Codon_change: atT/atC
        Amino_acid_change: I
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP