WormBase Tree Display for Variation: WBVar00002836
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| WBVar00002836 | Name | Public_name | WBVar00002836 | ||
|---|---|---|---|---|---|
| Other_name | pas12164 | ||||
| uCE1-524 | |||||
| haw112388 | |||||
| cewivar00066216 | |||||
| C53D5.1a.1:c.61-2159T>C | |||||
| HGVSg | CHROMOSOME_I:g.293633T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | C53D5 | |
| Flanking_sequences | tccggctaatgaggttcttagggcgtaggacgccattgatttgtgctcttttcaggcaaaattttagattttatttctctgatttcactcaattatcagacaatctaagttttttgacatgttcaatgctggaagcaattttcgatttttttatcgaccatggcctaaaattacgggtcaatttcctgaaacggacgaacatttttgaaagcaaaacagtttgtagagtttcgctaaaatttctgatttttatcgaaaaaatcgggcacaccaaacaaaagttcgtttgtgtcaggacct | gacggtacgcaattttcggacaaaccacgtgtggctgattcaaaaatgtcaactaaattgacatcttgaaaacatttttttcacctgaaaaccactaacagtgtcaggttaatccgattcaagcgctatttttatgaactttcctgaaagtttaattccacacgttgtgagggaatttgacacatttttagaaaacctgatctcacggttaatttttaaacacttcgagggcccagaaatcctagttttttttctggttattcatagtttttctagaatttaatttcacatctacatttc | |||
| Mapping_target | C53D5 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (31) | |||||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Swan | |||||
| History | Acquires_merge | WBVar00266735 | |||
| WBVar00532253 | |||||
| WBVar01279585 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00016902 | |||
| Transcript | C53D5.1a.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C53D5.1a.1:c.61-2159T>C | ||||
| Intron_number | 2/9 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| WBPaper00005369 | |||||
| Method | WGS_Pasadena_Quinlan |
