WormBase Tree Display for Variation: WBVar00002670
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| WBVar00002670 | Name | Public_name | WBVar00002670 | ||
|---|---|---|---|---|---|
| Other_name (14) | |||||
| HGVSg | CHROMOSOME_V:g.10843941A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | C29A12 | |
| Flanking_sequences | tgaaaataagaccacgatttgtgaa | attttcttgttgtcaagtagcagta | |||
| Mapping_target | C29A12 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| History | Acquires_merge | WBVar00243377 | |||
| WBVar00589281 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00007799 | |||
| Transcript | C29A12.4l.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C29A12.4l.1:c.4126+1448A>T | ||||
| Intron_number | 24/27 | ||||
| C29A12.4k.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C29A12.4k.1:c.4654+422A>T | ||||
| Intron_number | 25/28 | ||||
| C29A12.4j.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C29A12.4j.1:c.481+422A>T | ||||
| Intron_number | 3/6 | ||||
| C29A12.4b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C29A12.4b.1:c.4627+422A>T | ||||
| Intron_number | 25/29 | ||||
| C29A12.4c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C29A12.4c.1:c.709+422A>T | ||||
| Intron_number | 4/7 | ||||
| C29A12.4d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C29A12.4d.1:c.181+1448A>T | ||||
| Intron_number | 3/6 | ||||
| C29A12.4m.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C29A12.4m.1:c.340+1448A>T | ||||
| Intron_number | 3/7 | ||||
| C29A12.4f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C29A12.4f.1:c.868+422A>T | ||||
| Intron_number | 4/8 | ||||
| C29A12.4a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C29A12.4a.1:c.4099+1448A>T | ||||
| Intron_number | 24/28 | ||||
| C29A12.4h.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C29A12.4h.1:c.151+422A>T | ||||
| Intron_number | 1/4 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00004703 | |||||
| Remark | [20081124 db] this Variation was previously named hw81632 | ||||
| Method | WGS_Hawaiian_Waterston |
