WormBase Tree Display for Variation: WBVar00001943
expand all nodes | collapse all nodes | view schema
WBVar00001943 | Evidence | Paper_evidence | WBPaper00037807 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00001943 | |||
Other_name | haw31511 | ||||
cewivar00187457 | |||||
Y46G5A.1d.1:c.1412-1107T>C | |||||
Y46G5A.1a.1:c.1411+3998T>C | |||||
Y46G5A.1b.1:c.1411+3998T>C | |||||
HGVSg | CHROMOSOME_II:g.12705723T>C | ||||
Sequence_details | SMap | S_parent | Sequence | Y46G5A | |
Flanking_sequences | atacgttccaaaatttttttttcct | aattttaattacgaccttaaaaaat | |||
Mapping_target | Y46G5A | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
WGS_Hawaiian_Waterston | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01380173 | |||
Status | Live | ||||
Affects | Gene | WBGene00012894 | |||
Transcript | Y46G5A.1b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y46G5A.1b.1:c.1411+3998T>C | ||||
Intron_number | 7/16 | ||||
Y46G5A.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y46G5A.1a.1:c.1411+3998T>C | ||||
Intron_number | 8/17 | ||||
Y46G5A.1d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y46G5A.1d.1:c.1412-1107T>C | ||||
Intron_number | 7/7 | ||||
Reference | WBPaper00037807 | ||||
Remark | [20081124 db] this Variation was previously named hw31511 | ||||
Method | WGS_Hawaiian_Waterston |