WormBase Tree Display for Variation: WBVar00001529
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WBVar00001529 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00001529 | ||||
Other_name | cbs989 | |||||
cb989 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | chrI:g.15209654T>C | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc4140 | ||
Flanking_sequences | ttcaacgcaatcggacagatttgaa | gaacttatgagccgatttccgtttc | ||||
Mapping_target | cb25.fpc4140 | |||||
Type_of_mutation | Substitution | A | G | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 280 245 166 103 78 73 40 9 6 | ||
AATT | Sse9I, TasI, Tsp509I, TspEI | 280 166 146 94 93 73 40 38 35 9 9 6 6 5 | ||||
Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 280 195 166 103 78 73 50 40 9 6 | |||
AATT | Sse9I, TasI, Tsp509I, TspEI | 280 166 102 94 93 73 44 40 38 35 9 9 6 6 5 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00038974 | ||||
Transcript | CBG19814a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | CBG19814a.1:c.132+1368A>G | |||||
Intron_number | 2/8 | |||||
CBG19814b.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG19814b.1:c.102+1368A>G | |||||
Intron_number | 2/8 | |||||
CBG19814c.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG19814c.1:c.102+1368A>G | |||||
Intron_number | 2/8 | |||||
CBG19814d.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG19814d.1:c.132+1368A>G | |||||
Intron_number | 2/8 | |||||
CBG19814e.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG19814e.1:c.705+1368A>G | |||||
Intron_number | 7/13 | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |