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WormBase Tree Display for Variation: WBVar00001529

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Name Class

WBVar00001529EvidencePaper_evidenceWBPaper00030778
WBPaper00055507
NamePublic_nameWBVar00001529
Other_namecbs989
cb989Paper_evidenceWBPaper00055507
HGVSgchrI:g.15209654T>C
Sequence_detailsSMapS_parentSequencecb25.fpc4140
Flanking_sequencesttcaacgcaatcggacagatttgaagaacttatgagccgatttccgtttc
Mapping_targetcb25.fpc4140
Type_of_mutationSubstitutionAG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestRAATTYAcsI, ApoI, XapI280 245 166 103 78 73 40 9 6
AATTSse9I, TasI, Tsp509I, TspEI280 166 146 94 93 73 40 38 35 9 9 6 6 5
Polymorphic_strain_digestRAATTYAcsI, ApoI, XapI280 195 166 103 78 73 50 40 9 6
AATTSse9I, TasI, Tsp509I, TspEI280 166 102 94 93 73 44 40 38 35 9 9 6 6 5
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00038974
TranscriptCBG19814a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG19814a.1:c.132+1368A>G
Intron_number2/8
CBG19814b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG19814b.1:c.102+1368A>G
Intron_number2/8
CBG19814c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG19814c.1:c.102+1368A>G
Intron_number2/8
CBG19814d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG19814d.1:c.132+1368A>G
Intron_number2/8
CBG19814e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG19814e.1:c.705+1368A>G
Intron_number7/13
ReferenceWBPaper00030778
WBPaper00055507
RemarkPredicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP