WormBase Tree Display for Variation: WBVar00001204
expand all nodes | collapse all nodes | view schema
| WBVar00001204 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00001204 | ||||
| Other_name | cbs742 | |||||
| cb742 | Paper_evidence | WBPaper00055507 | ||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4140 | ||
| Flanking_sequences | gaattattctaaacctataattaag | ctgtttttattccagatttcagatt | ||||
| Mapping_target | cb25.fpc4140 | |||||
| Type_of_mutation | Substitution | C | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | GGTACC | Acc65I, Asp718I, KpnI | 1000 | ||
| GGYRCC | AccB1I, BanI, BshNI, BspT107I, HgiCI | 672 328 | ||||
| RAATTY | AcsI, ApoI, XapI | 248 197 189 139 138 69 20 | ||||
| GTAC | AfaI, Csp6I, RsaI | 568 432 | ||||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 572 330 82 16 | ||||
| CTNAG | BstDEI, DdeI | 624 206 170 | ||||
| RGCY | CviJI, CviTI | 333 143 135 128 57 44 41 39 23 20 18 12 7 | ||||
| GTNAC | MaeIII | 633 296 71 | ||||
| TTAA | MseI, Tru1I, Tru9I | 438 175 141 106 64 29 24 13 10 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 205 127 76 73 69 68 64 63 43 40 32 28 26 20 17 14 12 12 11 | ||||
| Polymorphic_strain_digest | GGTACC | Acc65I, Asp718I, KpnI | 705 295 | |||
| GGYRCC | AccB1I, BanI, BshNI, BspT107I, HgiCI | 377 328 295 | ||||
| RAATTY | AcsI, ApoI, XapI | 248 197 189 139 138 39 30 20 | ||||
| GTAC | AfaI, Csp6I, RsaI | 432 293 275 | ||||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 377 330 195 82 16 | ||||
| CTNAG | BstDEI, DdeI | 513 376 111 | ||||
| RGCY | CviJI, CviTI | 345 143 135 116 57 44 41 39 23 20 18 12 7 | ||||
| GTNAC | MaeIII | 929 71 | ||||
| TTAA | MseI, Tru1I, Tru9I | 438 175 141 106 64 29 25 12 10 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 205 127 116 73 68 64 63 43 39 32 30 28 26 20 17 14 12 12 11 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
