WormBase Tree Display for Gene: WBGene00230164

WBGene00230164 SMap: S_parent: Sequence: Bm_v4_ChrX_scaffold_001
  Identity: Version: 6
    Name: CGC_name: Bma-lim-6 From_analysis: Inferred_from_orthology
      Sequence_name: Bm9903
      Molecular_name: Bm9903
        Bm9903.1
        BM36323
      Other_name: Bm-lim-6
        TAG9903 Curator_confirmed: WBPerson4055
        Bm1_34015 Person_evidence: WBPerson5841
      Public_name: Bma-lim-6
    Species: Brugia malayi
    History: Version_change: 1 10 Dec 2012 14:43:26 WBPerson4055 Event: Created
        2 05 Jul 2013 11:43:21 WBPerson4055 Name_change: CGC_name: Bma-lim-6
                Other_name: Bm-lim-6
        3 08 Feb 2019 15:42:29 WBPerson1983 Name_change: CGC_name: Removed
        4 08 May 2019 10:09:25 WBPerson1983 Name_change: CGC_name: Bma-lim-6
        5 28 May 2021 19:05:21 WBPerson1983 Name_change: CGC_name: Removed
        6 28 Jul 2021 11:12:29 WBPerson1983 Name_change: CGC_name: Bma-lim-6
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lim
    RNASeq_FPKM: WBls:0000097 0.640943 From_analysis: RNASeq.brugia.WBStrain00041073.WBls:0000097.L3/L4.WBbt:0007833.SRP068692.SRX1539819
        0.094133 From_analysis: RNASeq.brugia.WBls:0000097.control_mean
        0.097352 From_analysis: RNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
        0.467446 From_analysis: RNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
        0 From_analysis: RNASeq.brugia.WBls:0000097.control_median
            RNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
            RNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
            RNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
            RNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
      WBls:0000078 0.430253 From_analysis: RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
        0.526377 From_analysis: RNASeq.brugia.WBls:0000078.control_median
            RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
        0.652931 From_analysis: RNASeq.brugia.WBls:0000078.control_mean
        1.01659 From_analysis: RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
        1.10734 From_analysis: RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
        1.48996 From_analysis: RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
        0 From_analysis: RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
            RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
      WBls:0000080 1.84523 From_analysis: RNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
        0 From_analysis: RNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
        2.06651 From_analysis: RNASeq.brugia.WBls:0000080.control_mean
        2.30056 From_analysis: RNASeq.brugia.WBls:0000080.control_median
        2.75589 From_analysis: RNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
        3.66491 From_analysis: RNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
      WBls:0000081 (20)
      WBls:0000082 0.25451 From_analysis: RNASeq.brugia.WBls:0000082.control_mean
        0.47624 From_analysis: RNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
        0.796308 From_analysis: RNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
        0 From_analysis: RNASeq.brugia.WBls:0000082.control_median
            RNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
            RNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
            RNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
      WBls:0000083 (30)
      WBls:0000092 1.45332 From_analysis: RNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
        1.4599 From_analysis: RNASeq.brugia.WBls:0000092.control_mean
            RNASeq.brugia.WBls:0000092.control_median
        1.46648 From_analysis: RNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
      WBls:0000094 2.48083 From_analysis: RNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
        2.53909 From_analysis: RNASeq.brugia.WBls:0000094.control_mean
            RNASeq.brugia.WBls:0000094.control_median
        2.59736 From_analysis: RNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
      WBls:0000101 0.467446 From_analysis: RNASeq.brugia.total_over_all_stages.control_median
        0.714829 From_analysis: RNASeq.brugia.total_over_all_stages.control_mean
      WBls:0000662 0 From_analysis: RNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
        2.15045 From_analysis: RNASeq.brugia.WBls:0000662.control_mean
            RNASeq.brugia.WBls:0000662.control_median
        4.30091 From_analysis: RNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
      WBls:0000663 0.60729 From_analysis: RNASeq.brugia.WBls:0000663.control_mean
            RNASeq.brugia.WBls:0000663.control_median
            RNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
    GO_annotation: 00248110
    Contained_in_operon: BMOP2692
    Ortholog (27)
    Paralog: WBGene00222094 Brugia malayi From_analysis: WormBase-Compara
      WBGene00222947 Brugia malayi From_analysis: WormBase-Compara
      WBGene00223383 Brugia malayi From_analysis: WormBase-Compara
      WBGene00224403 Brugia malayi From_analysis: WormBase-Compara
      WBGene00227494 Brugia malayi From_analysis: WormBase-Compara
      WBGene00227603 Brugia malayi From_analysis: WormBase-Compara
      WBGene00227612 Brugia malayi From_analysis: WormBase-Compara
      WBGene00235032 Brugia malayi From_analysis: WormBase-Compara
      WBGene00269107 Brugia malayi From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable DNA binding activity. Is an ortholog of C. elegans lim-6. In C. elegans, lim-6 is involved in several processes, including regulation of gene expression; system process; and uterus morphogenesis. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Bm9903
    Corresponding_transcript: Bm9903.1
    Other_sequence: ES570229.1
      Acan_isotig17193
      SS02867
      TSC06900_1
      SSC02344_1
      Dviv_isotig26261
      JI212657.1
  Experimental_info: Expression_cluster: WBPaper00051007:downregulated_M120_vs_F120
  Remark: [190208 pad] The CGC name Bma-lim-6 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Bma-lim-6 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene