WormBase Tree Display for Gene: WBGene00195146
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| WBGene00195146 | SMap | S_parent | Sequence | F54D5 | ||||
|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | ||||||
| Name | Sequence_name | F54D5.17 | ||||||
| Molecular_name | F54D5.17 | |||||||
| F54D5.17.1 | ||||||||
| CE52254 | ||||||||
| F54D5.17.2 | ||||||||
| Other_name | CELE_F54D5.17 | Accession_evidence | NDB | BX284602 | ||||
| Public_name | F54D5.17 | |||||||
| DB_info | Database | WormFlux | gene | WBGene00195146 | ||||
| NDB | locus_tag | CELE_F54D5.17 | ||||||
| NCBI | gene | 13187194 | ||||||
| RefSeq | protein | NM_001267374.4 | ||||||
| TrEMBL | UniProtAcc | D7SFM0 | ||||||
| UniProt_GCRP | UniProtAcc | D7SFM0 | ||||||
| Species | Caenorhabditis elegans | |||||||
| History | Version_change | 1 | 20 May 2010 12:09:00 | WBPerson1983 | Event | Created | ||
| Status | Live | |||||||
| Gene_info | Biotype | SO:0001217 | ||||||
| Allele (29) | ||||||||
| RNASeq_FPKM (74) | ||||||||
| Ortholog | chrII_pilon.g5983 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
| Paralog | WBGene00007085 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
| WBGene00012264 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00022651 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00269422 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Enriched in ABaraappaa; muscle cell; rectal muscle; and somatic gonad precursor based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including eat-2; sek-1; and pgl-1 based on RNA-seq studies. Is affected by five chemicals including tryptophan; Zidovudine; and Psoralens based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||
| Curator_confirmed | WBPerson324 | |||||||
| WBPerson37462 | ||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||
| Molecular_info | Corresponding_CDS | F54D5.17 | ||||||
| Corresponding_CDS_history | F54D5.17:wp261 | |||||||
| Corresponding_transcript | F54D5.17.1 | |||||||
| F54D5.17.2 | ||||||||
| Other_sequence | MA02740 | |||||||
| Associated_feature | WBsf644698 | |||||||
| WBsf989801 | ||||||||
| WBsf989802 | ||||||||
| WBsf1013261 | ||||||||
| WBsf1013262 | ||||||||
| Experimental_info | Expr_pattern | Expr1040481 | ||||||
| Expr1152113 | ||||||||
| Expr2004150 | ||||||||
| Expr2022374 | ||||||||
| Microarray_results | GPL19516_CGZ0023768 | |||||||
| GPL21109_F54D5.17 | ||||||||
| Expression_cluster (31) | ||||||||
| Map_info | Positive | Positive_clone | F54D5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
| Interpolated_map_position | II | 3.75865 | ||||||
| Method | Gene |
