WormBase Tree Display for Gene: WBGene00139571

WBGene00139571 SMap: S_parent: Sequence: Cbre_Contig23
  Identity: Version: 2
    Name: CGC_name: Cbn-avr-15 From_analysis: Inferred_from_orthology
      Sequence_name: CBN00846
      Molecular_name: CBN00846
        CBN00846.1
        CN27674
      Public_name: Cbn-avr-15
    Species: Caenorhabditis brenneri
    History: Version_change: 1 01 Oct 2008 13:29:50 WBPerson4055 Event: Imported: from NGASP
        2 28 Jul 2021 11:12:29 WBPerson1983 Name_change: CGC_name: Cbn-avr-15
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: avr
    RNASeq_FPKM: WBls:0000002 (11)
      WBls:0000004 0.377937 From_analysis: RNASeq.brenneri.WBls:0000004.control_mean
            RNASeq.brenneri.WBls:0000004.control_median
        0.755873 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
      WBls:0000024 15.816 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
        21.8708 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
        32.0433 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
        35.8447 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
        39.0848 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
      WBls:0000038 10.1842 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
        8.1068 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
        9.1455 From_analysis: RNASeq.brenneri.WBls:0000038.control_mean
            RNASeq.brenneri.WBls:0000038.control_median
      WBls:0000041 (16)
      WBls:0000101 3.4632 From_analysis: RNASeq.brenneri.total_over_all_stages.control_median
        6.71418 From_analysis: RNASeq.brenneri.total_over_all_stages.control_mean
    GO_annotation: 00202788
      00202789
      00202790
      00202791
      00202792
      00202793
    Ortholog (28)
    Paralog (128)
    Structured_description: Automated_description: Predicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans avr-15. In C. elegans, avr-15 is involved in action potential; locomotion involved in locomotory behavior; and regulation of pharyngeal pumping. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBN00846
    Corresponding_CDS_history: CBN00846:np197
    Corresponding_transcript: CBN00846.1
    Other_sequence (41)
  Experimental_info: Microarray_results: GPL14142_CBN00846_1240-1299_0.916_18_C
      GPL14142_CBN00846_1474-1533_0.939_8_A
      GPL14142_CBN00846_1539-1598_0.919_16_B
  Method: Gene