WormBase Tree Display for Gene: WBGene00113211
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WBGene00113211 | SMap | S_parent | Sequence | PPA_ChrV | ||
---|---|---|---|---|---|---|
Identity | Version | 5 | ||||
Name | CGC_name | Ppa-unc-40 | From_analysis | Inferred_from_orthology | ||
Sequence_name | PPA23657 | |||||
Molecular_name | PPA23657 | |||||
PPA23657.1 | ||||||
PP54034 | ||||||
Other_name | GENEPREDICTION_SNAP300000080543 | |||||
UMM-S13-5.23 | Person_evidence | WBPerson606 | ||||
Public_name | Ppa-unc-40 | |||||
Species | Pristionchus pacificus | |||||
History | Version_change (5) | |||||
Status | Live | |||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | unc | |||||
RNASeq_FPKM | WBls:0000032 | 3.96731 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | ||
RNASeq.pristionchus.WBls:0000032.control_median | ||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||||||
WBls:0000101 | 12.1812 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||
RNASeq.pristionchus.WBls:0000101.control_median | ||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | ||||||
3.96731 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||
5.38284 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||
Ortholog (36) | ||||||
Paralog (12) | ||||||
Structured_description | Automated_description | Is predicted to encode a protein with the following domains: Fibronectin type III superfamily; Neogenin; Immunoglobulin I-set domain; Immunoglobulin I-set; Fibronectin type III; Immunoglobulin-like fold; Immunoglobulin subtype 2; Immunoglobulin-like domain superfamily; Fibronectin type III domain; and Immunoglobulin subtype. Is an ortholog of C. elegans unc-40. In C. elegans, unc-40 is involved in several processes, including axon guidance; regulation of locomotion; and sex differentiation. | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | PPA23657 | ||||
Corresponding_transcript | PPA23657.1 | |||||
Other_sequence (16) | ||||||
Experimental_info | Microarray_results | GPL14372_Probes_6202 | ||||
GPL14372_Probes_6204 | ||||||
GPL14372_Probes_45985 | ||||||
GPL14372_Probes_45986 | ||||||
GPL14372_Probes_45987 | ||||||
GPL14372_Probes_47987 | ||||||
GPL14372_Probes_47988 | ||||||
Reference | WBPaper00043625 | |||||
WBPaper00048121 | ||||||
Remark | [190208 pad] The CGC name Ppa-unc-40 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||
[200603 pad] The CGC name Ppa-unc-40 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
Method | Gene |