WormBase Tree Display for Gene: WBGene00108360
expand all nodes | collapse all nodes | view schema
| WBGene00108360 | SMap | S_parent | Sequence | PPA_ChrX | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 5 | |||||||
| Name | CGC_name | Ppa-apt-9 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA18806 | ||||||||
| Molecular_name | PPA18806 | ||||||||
| PPA18806.1 | |||||||||
| PP54120 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000075620 | ||||||||
| UMM-S293-6.10 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-apt-9 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 3 | 08 May 2019 10:09:21 | WBPerson1983 | Name_change | CGC_name | Ppa-apt-9 | ||||
| 4 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 5 | 28 Jul 2021 11:12:26 | WBPerson1983 | Name_change | CGC_name | Ppa-apt-9 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | apt | ||||||||
| RNASeq_FPKM | WBls:0000032 | 26.4059 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 2.83514 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 9.74701 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| GO_annotation | 00181780 | ||||||||
| 00181781 | |||||||||
| Ortholog (25) | |||||||||
| Paralog | WBGene00096621 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00105253 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00108391 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable phosphatidylinositol binding activity and ubiquitin binding activity. Is an ortholog of C. elegans apt-9. In C. elegans, apt-9 is involved in protein secretion. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA18806 | |||||||
| Corresponding_transcript | PPA18806.1 | ||||||||
| Other_sequence | Acan_isotig02220 | ||||||||
| JI169596.1 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_75663 | |||||||
| GPL14372_Probes_75664 | |||||||||
| GPL14372_Probes_75665 | |||||||||
| GPL14372_Probes_75666 | |||||||||
| GPL14372_Probes_75667 | |||||||||
| Remark | [190208 pad] The CGC name Ppa-apt-9 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-apt-9 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
